Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq44 208 9e-49 seq1288 127 3e-24 seq105 114 2e-20 seq1327 98.7 1e-15 seq1314 86.0 8e-12 >seq44 Length=77107 Score = 208 bits (230), Expect = 9e-49 Identities = 581/877 (66%), Gaps = 22/877 (3%) Strand=Plus/Minus Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| |||| || | |||||| || || || || ||||| | | ||||| | ||| Sbjct 10072 ACAAACTTTGGCAAGGCGATAGAGGCGAGGTTGCACACGGCGACTTCATCGGGAGAGGTG 10013 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGA 116532 |||| | ||| || || || || ||| || | ||||| || | ||||| || Sbjct 10012 TACTGAACAATCTCGGTGCA-AAGGTTG--CTGCAAGAGATGGTTCCGAGGTTCTGCTGG 9956 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||||| |||| || || ||||||||||| || || || || || ||||| | || Sbjct 9955 TTGGACTTGCTGTTGCAAGCGTCCTTGTAGAGGATGTAGGGGGTACCGGTCTCGATCTGT 9896 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG-GCTCGCCCCTC 116651 |||| || ||||| ||| | ||| || || ||| || | | | || Sbjct 9895 GACTCGATGATAGCGAACCAGAGATCCTGAGCCTTTACGGTG-CGACGAGAGAGGCCAGG 9837 Query 116652 ---CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCC 116707 | |||| ||||| |||||||| | ||||| || ||| |||| ||| | ||| | Sbjct 9836 TGTCGCCTCATACTTGGTGTAGAGCTCGCGGAACTCATCTCCC-CAGCACTCGGCGAGGC 9778 Query 116708 CTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 116767 | ||||||| || |||||||||||| ||| | | ||| || |||| ||||| Sbjct 9777 CAGGTGCCTCATTGGGACAGAAGAGACTCCAGTCAGAGTTGGTCTCGACACGCTCCATGA 9718 Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCC 116825 | || || | || ||||||||| ||||||| || || || || ||| || | || Sbjct 9717 ACAGATCAGAGACCCAGAGCGCGTAGAAGAGGTCGCGG--GCACGCATCTCCTCCTTGCC 9660 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 116885 || || || | || | || || | || || |||||||| || || ||||| || Sbjct 9659 GTGGTTCTTGCGAAGATCAAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGAC 9600 Query 116886 CGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAA 116942 || | | |||||||| | ||| |||||| || || | || || | || || Sbjct 9599 GGCAAAGGCACCCTTGCGCTTTCCGCCACCCTGGTCGACGTAGCGGGCAGTGTCATTGAA 9540 Query 116943 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT 117002 |||||||||||||| | || || | || ||| || || || || || || Sbjct 9539 GACGCGAAGCATTGGTACGAGTCCGTTCGAGGTGCCGTTGGTACCGCGGATGTAGGAGCG 9480 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | |||| | || | ||||||| ||||| | ||| || || |||||||||| | || Sbjct 9479 GCTGGCACGGATCTTGTGGATGGCGATACCGAGACCACCGGCAGACTTTGAGATGAGGGC 9420 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGA 117121 ||||| | | || | ||||||| || ||||| ||| |||| || || || ||||| Sbjct 9419 GCACTGCTTAAGTGTCTCGTAGATACCGTCGATGCTGTCCTCCTTCATCTG-GACGAGGA 9361 Query 117122 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 117181 |||| ||||| || || | || ||||| | ||||||||||||||| || ||||| Sbjct 9360 AGCAAGAGGACATCTGGGGTGTGGGGGTACCCGAGTTGAAGAGGGTTGGCGTGGCGTGCG 9301 Query 117182 TGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGT 117241 | || | || | || | || | |||||| || | | | | | |||||| || |||| Sbjct 9300 TAAAGAGACGCTTCGAGAGCTGGTGGTAGGTTTCGACGGCGGCGTCAATGTCATCGCCGT 9241 Query 117242 GAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 | ||||||| ||||| ||||| | ||| | |||||| Sbjct 9240 GGATACCGAGAGAGACACGCATGAGCATCTGTTGGGG 9204 Score = 143 bits (158), Expect = 3e-29 Identities = 309/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 115557 TCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGA 115616 || |||||||||||| || ||||| || |||| |||||| || || | |||||||| | Sbjct 10940 TCTGAGGTAGTACATTCCAGTCTTCAGACCCTTCTTCCAAGCGTAGAAGTGCATTGAAGT 10881 Query 115617 CAACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 |||||||| | ||| |||| | ||||| | ||| | ||| || ||||| | Sbjct 10880 CAACTTGGCAAAGT-TTGGCTCGGCGATGAACACGTTGAACGACTGGCTCTGGTCGATAA 10822 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTT 115734 || || || || || ||||| || || | | | | | ||| ||||| ||||| Sbjct 10821 AGGCACCACGGTCGGCAGCCATGTCGATGAGGGTACGTTGACG-GATCTCCCAGACAGTC 10763 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 ||||||| | ||| | || || || || || ||| || ||||| || || | || Sbjct 10762 TTGTAGAGCTCCTTTAACTCGTCAGGAATGCCCTGGATGTTCTGGATGGAACC-CTTG-- 10706 Query 115795 TTGACC-ATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTC 115850 ||| | |||| | | |||||| || || |||||| ||| || | |||| |||| Sbjct 10705 -TGAGCGATGATCTGGTTCTTCATCTCTGGTGTCCAGAGGTCAAGCTCCATGAGGTCCTT 10647 Query 115851 CACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTT 115910 | || ||||| ||||| ||| ||||| || |||||| ||| | |||||||| Sbjct 10646 GAGCAGCTGCTTGTTGACGACAGTGAACTCTCCGGCGAGGACGCGACGACTGTAGATGTT 10587 Query 115911 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 115970 | | ||||| || || || ||| ||||| || | ||| || | || ||||| || || Sbjct 10586 GCTGGTGTACGGTTCGAACGCCTCGTTGTTTCCGAGGATCTGAGAGGTCGAGGCGGTAGG 10527 Query 115971 CATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 ||||||||| | | | |||||||||||||| Sbjct 10526 CATGGGTGCAACCATCAAACTGTTGCGGAGACC 10494 >seq1288 Length=22276 Score = 127 bits (140), Expect = 3e-24 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||| |||||||| ||| ||| || || ||||||||| || || Sbjct 670 GCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAAGGTGAGGCCG 611 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||| || |||||||| | |||||| |||| || || ||||| ||||||||||| Sbjct 610 TGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 551 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || ||||| | || |||||||||||| ||| || ||| || | | Sbjct 550 CCCTCGACGGCGGCAAACGCGACGAGGCGCTCGGCAAAGCTGCGCGAGTTT---TCGATC 494 Query 127700 CACTTCATCGCCCACTGTGCCTTTTT 127725 || |||||||||| ||||| || Sbjct 493 CAGCGGATCGCCCACTCGGCCTTCTT 468 >seq105 Length=265611 Score = 114 bits (126), Expect = 2e-20 Identities = 344/519 (66%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 12555 AGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTC 12614 ||||| |||| ||||||||| |||||||||| || ||||| | ||| Sbjct 116251 AGGTTGGCCAGGTCGGCACCGGAGAAGCCCGGGGTGCCGCGCGCGATCACCATCGGCTCG 116192 Query 12615 ACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGACACCCAAA--ATCTTCTCGCGTCCGC 12672 || ||||| |||| | | || | || || |||| | |||| |||||| |||| Sbjct 116191 ACGTCGTCGGCCAGCGGCAG--CTTGCGCATGTGCACCTTGAGGATCTGCTCGCGGCCGC 116134 Query 12673 GCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGT 12732 |||| || ||| ||| || || || || |||||||| || || || || || Sbjct 116133 GCACGTCGGCCAGGCCCACAACGACCTGGCGGTCGAAGCGACCCGGACGCAGCAGCGCCG 116074 Query 12733 CGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA-TCG 12791 || || | || ||||| || || |||||||| | | |||| || | | ||| Sbjct 116073 GATCCAGCACGTCGGGACGGTTGGTGGCGGCGATGACGATCACGCCC-TCGCCTCCCTCG 116015 Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 ||||| |||||||| || || || || | ||| || || || || |||| || | Sbjct 116014 AAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTCGCGCTCGTCATGACCG--C 115957 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 ||| || |||| || || ||||||||||| |||||||| ||||| | ||| | Sbjct 115956 CGCCCAGGCCGGCACCACGGTGGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGC 115897 Query 12910 ACGGTTGAT-TTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| | ||| || | | || || || || || || | |||| ||||| || Sbjct 115896 ACGGCGCCTGCTTCTTGGCCTGC-TCGAACATGTCGCGGACGCGGCTGGCGCCGACGCCG 115838 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 || ||||| ||||| |||| | ||| | || | || ||| ||||| |||| || || Sbjct 115837 ACGAACATTTCCACGAAATCCGAACCGG-AGATCGAGAAGAACGGGACCTTGGCCTCGCC 115779 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 |||||||| ||||| || |||||||| || || || || Sbjct 115778 GGCGATGGCGCGGGCAAGCAGGGTCTTGCCGGTACCGGG 115740 >seq1327 Length=12810 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||||| |||| ||||| ||||||||||||| | | || | || |||| ||| | Sbjct 227 AAAGAGGTCTCTAACTCTTCTGGCACCGACACCTATATACTTTTCGTCAAAGCTGGATCC 286 Query 12995 GGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 || | || ||||||||||| || ||| || |||||||| ||||||||||||||||| Sbjct 287 GGTGGTGTAGAGGAAGGGGACGTCGGCTTCTCCGGCGATGGCGCGGGCGAGGAGGGTCTT 346 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACTTCCAA 13113 || || ||||| | |||| ||| ||| || | |||| ||| |||| || | | Sbjct 347 GCCGGTGCCTGGCTCGCCCGAGAGCAGGATGCC-CTTGGGCATCTTGGCGCCGATACTGT 405 Query 13114 AGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGT 13173 ||| ||||| | | | |||| || || || ||| || | ||| | ||| Sbjct 406 CGTACTTGTCGGGGTCGCGCAAATAGTCGACAATCTCGGCCATCTCGTGCTTGACCTCGT 465 Query 13174 CGATGCCTTCAACGTCACTGAAG 13196 ||||||| | ||||| |||||| Sbjct 466 CGATGCCGTGCACGTCGCTGAAG 488 >seq1314 Length=16474 Score = 86.0 bits (94), Expect = 8e-12 Identities = 186/277 (67%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 175893 TGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCA---TCTTTGCCACCCATGAGACGCG 175949 ||||||| || |||||||| | | || ||| |||| |||||| |||||| | Sbjct 8670 TGAGTTTGGTAAAGATGTAACGAG---GACTGGCAGAGTCTTCGCCACCTTGGAGACGGG 8726 Query 175950 TCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCG 176009 | || |||||||| | | | | |||| ||| ||||| || | | |||| | | Sbjct 8727 TACCGAATTGACCGCCTTGGGAGATGAGAGGGATGTTGTTGCTTCCGACAAAGTCTTGGG 8786 Query 176010 CCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCG 176069 ||| ||||| || || || ||| || || ||||| |||||||| | | || | Sbjct 8787 CCATTTTGACGATGGTGGACGAGAGCGATTGCTCGCCGTGGTGGTAGGCGGTGTGCTCGG 8846 Query 176070 CCACATACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACG 176129 | || || | || | ||| || ||||| ||||| || |||||| | |||||| | Sbjct 8847 CGACGTAGCCGGCGAGCTGGGCGACCTTTATCTCGCTCTGGAGGTTGCGCTTGAAGCAGG 8906 Query 176130 CATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 | ||||||| ||| | ||| |||||||||||||| Sbjct 8907 CGTACATGATCTTGCGCTGGCCCGGCTTGAGGCCGTC 8943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613428003889320