Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq98 132 1e-26 seq83 84.2 5e-12 >seq98 Length=166217 Score = 132 bits (146), Expect = 1e-26 Identities = 176/237 (74%), Gaps = 23/237 (10%) Strand=Plus/Minus Query 14078 AAGGAGATCAAAAACTCCG-GA-CATAGCGGTACCCGCACCCGAAACCCATGCGGttttt 14135 |||||| | | |||||||| || || ||||| | |||| |||| | | |||||||||| Sbjct 114164 AAGGAGCTTAGAAACTCCGAGATCACAGCGGAAACCGCGCCCGTCAGCATTGCGGTTTTT 114105 Query 14136 ttACGCCTGCA---------------CGTTTT-TACGTCGGGAGGGCGGCAGCGATACAA 14179 || |||||| | ||| || | |||||||||||||||||| |||||| Sbjct 114104 TTGCGCCTGAAATCCAAGCGCACCGACGTCTTCTGCGTCGGGAGGGCGGCAGCCATACAA 114045 Query 14180 GACCC-TTTGGGGAAAGCTGCCCGCC-GTCTATG-TCCGGTTTTTGACCTCCCGACACCT 14236 |||| ||||||| ||||| ||| |||| || |||||||| | |||||||||| || Sbjct 114044 CACCCGCAAGGGGAAAACTGCCTGCCGGTCTGTGATCCGGTTTCTAACCTCCCGACTCCC 113985 Query 14237 ACGGGTGCGGCGCGCAAAAACGTCTCCCCGTGGTCATCCCATGA-CATAGGAGACGT 14292 | |||||| ||| | ||||||||||||| |||||| || || || ||||||||| Sbjct 113984 TC-GGTGCGACGCTTAGAAACGTCTCCCCGAGGTCATTCCTCGATCACAGGAGACGT 113929 Score = 131 bits (144), Expect = 4e-26 Identities = 162/215 (75%), Gaps = 25/215 (12%) Strand=Plus/Minus Query 13720 ACAGCGGTACCCGCACTCGTCAG-ATCGCGGtttttttACGCCTGCA------------- 13765 ||||||| | |||| | |||||| || ||||||||||| |||||| | Sbjct 114140 ACAGCGGAAACCGCGCCCGTCAGCATTGCGGTTTTTTTGCGCCTGAAATCCAAGCGCACC 114081 Query 13766 --CGTTTTA--CGTCGGGAGGGCGGCAGCCATACAACACCCGCAAGGGGAAAGCTGCCCG 13821 ||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 114080 GACGTCTTCTGCGTCGGGAGGGCGGCAGCCATACAACACCCGCAAGGGGAAAACTGCCTG 114021 Query 13822 CC-GTCTGT-TTCCGGTTTCTTACCCTCCCGACATTCTCAGGGCGGCGCGTAAGAACGTC 13879 || |||||| ||||||||| || ||||||||| ||| | ||| ||| || |||||| Sbjct 114020 CCGGTCTGTGATCCGGTTTC-TAACCTCCCGACTCCCTCGGTGCGACGCTTAGAAACGTC 113962 Query 13880 -CCCTGAGATCACATCTCACGA-AACAGGAGACGT 13912 ||| ||| | ||| | ||| ||||||||||| Sbjct 113961 TCCCCGAGGT--CATTCCTCGATCACAGGAGACGT 113929 Score = 111 bits (122), Expect = 4e-20 Identities = 162/224 (72%), Gaps = 25/224 (11%) Strand=Plus/Minus Query 14459 AAGGAGATCAAAAACTCCGGAAGTA--GCGGTAACCGCACCCGAAACCCATGCGGttttt 14516 |||||| | | |||||||| | | |||| |||||| |||| | | |||||||||| Sbjct 114164 AAGGAGCTTAGAAACTCCGAGATCACAGCGGAAACCGCGCCCGTCAGCATTGCGGTTTTT 114105 Query 14517 ttttACGCCTGCA---------------CGTTTT-TACGTCGGGAGGGCGGCAGCCATAC 14560 || |||||| | ||| || | ||||||||||||||||||||||| Sbjct 114104 TTG--CGCCTGAAATCCAAGCGCACCGACGTCTTCTGCGTCGGGAGGGCGGCAGCCATAC 114047 Query 14561 AACACCCTGTAAAGGGGAAAGCTGCCCGCC-GTCT-ACTTCCGGTTTTTGACCTCCCGAC 14618 ||||||| ||||||||| ||||| ||| |||| |||||||| | |||||||||| Sbjct 114046 AACACCC--GCAAGGGGAAAACTGCCTGCCGGTCTGTGATCCGGTTTCTAACCTCCCGAC 113989 Query 14619 ACCTACGGGTGCGGCGCGCAAAAGCGTCTCCCCGTGGTCATCCC 14662 || | |||||| ||| | || |||||||||| |||||| || Sbjct 113988 TCCCTC-GGTGCGACGCTTAGAAACGTCTCCCCGAGGTCATTCC 113946 >seq83 Length=313169 Score = 84.2 bits (92), Expect = 5e-12 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 6508 CCTGTCTTGCGCAGGGTGGGCAGAACTTCCTCAAACACCCAACGCTCGAACCGTTCTGCG 6567 || |||||||| | || ||||| ||||| ||||||||||| |||||| || || Sbjct 36799 CCAGTCTTGCGGATCGTCGGCAGCACTTCGTCAAACACCCAGGCTTCGAACTTCTCCGCC 36740 Query 6568 GCAGGGAGTTTGCTGCTCACAATCAAGCGGAGCATGTCAGGCTCGGAGATGATCCTGGTT 6627 | || || | |||| |||| |||| |||| |||||| |||||| | || | |||| Sbjct 36739 GTGGGCAGATGGCTGTTCACGATCAGGCGGTACATGTCGCCCTCGGAAAGAATGCGGGTT 36680 Query 6628 TCCCGCGAGCGACCAAGGCTATCTGGGATTGGGTAACACTTCGTTACCCCTCTGCAATG 6686 || || ||| || || || || ||||| |||| |||| ||||| | |||||| Sbjct 36679 TCTTGCATGCGGCCGAGACTGTCGGGGATGGGGTGGTGTTTCGCCACCCCACGGCAATG 36621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117220823081064