Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1210 145 9e-30 seq1971 140 4e-28 seq374 118 1e-21 seq1077 105 8e-18 seq396 105 8e-18 >seq1210 Length=15033 Score = 145 bits (160), Expect = 9e-30 Identities = 150/195 (77%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 12728 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 12787 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||| ||||||| || | | |||||||||| |||||| ||||| | Sbjct 12788 GATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 12847 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| |||| || || || | |||||||| ||||| || || || || Sbjct 12848 CTCGATCGTGTC---CGATCCCTCAACCTCAAGGGTGATGGTCTTGCCTGTGAGAGTCTT 12904 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 12905 TACAAAGATTTGCAT 12919 >seq1971 Length=9940 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||| | ||| |||||| ||||| |||||||| || Sbjct 4825 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 4766 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || |||||||||||||||||||| || | ||||| ||||||| || Sbjct 4765 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGA 4706 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| |||||| || | | |||||| ||| || Sbjct 4705 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACC 4646 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| |||| || || || ||||||||||| Sbjct 4645 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| |||||||||||||||||||| Sbjct 5018 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 4959 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||||| || | | |||||||||| |||||| |||||| | Sbjct 4958 AATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 4899 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || | |||||||| ||||| |||| || || || Sbjct 4898 CTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGAC 4839 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 4838 GAAAATCTGCAT 4827 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||| | ||| |||||| ||||| ||||||||||| Sbjct 4141 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 4082 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || |||||||| || ||||| || | ||||| ||||||| || Sbjct 4081 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4022 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCC 46543 | | |||||||||| |||||| |||||| || | | || ||| ||| ||| Sbjct 4021 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCG---GATCCCTCC 3965 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| ||||| || || || || |||||||| Sbjct 3964 ACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 127 bits (140), Expect = 2e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || ||||||||||| || Sbjct 4562 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAA 4503 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| |||||| | Sbjct 4502 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 4443 Query 46522 CGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| ||| || || || | |||||||| ||||| ||||| || || Sbjct 4442 CTCGATGGTGTC---CGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTT 4386 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 4385 GACGAAGATCTGCAT 4371 >seq374 Length=102525 Score = 118 bits (130), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || || || ||||| |||| || || ||||| || ||||| Sbjct 384 CTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCAGCGAA 325 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| |||| | | Sbjct 324 AATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTAGTCTTTACGTT 265 Query 46522 CGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | || || ||| ||| || || | |||||||| ||||| || || || || Sbjct 264 CTCAATGGTATC---CGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTT 208 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 207 GACAAAGATTTGCAT 193 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| |||| ||||||||||||||||| || Sbjct 612 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 553 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||||| || | | |||||||||| |||||| |||||| | Sbjct 552 GATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTTGTCTTGACGTT 493 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || || |||| || ||||| ||||| || || || || || Sbjct 492 CTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTTAC 433 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 432 GAAAATTTGCAT 421 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| ||||| |||||||| |||| ||||||||||||||||| || Sbjct 840 CTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 781 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| || |||| || | || ||||||||| ||||| |||||| | Sbjct 780 GATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTAGTCTTGACGTT 721 Query 46522 CGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| ||| || || |||| ||||| || || || || || || || Sbjct 720 CTCAATGGTGTC---CGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTCTT 664 Query 46579 AACAAAGATTTGCAT 46593 || || |||||||| Sbjct 663 TACGAAAATTTGCAT 649 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||| | || |||||| || || || ||||||| Sbjct 193 TGCCTCCACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGG 134 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || ||||| |||||||| ||||| || | ||||||||||||| | Sbjct 133 AAAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGG 74 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 | | || |||||||||| |||||| |||| Sbjct 73 GAATGCCCTCCTTGTCCTGGATCTTAGTCTT 43 >seq1077 Length=16265 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 5410 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 5351 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | |||||| ||||||| || | | |||||||||| |||||| ||||| Sbjct 5350 GATGAGGCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 5295 >seq396 Length=82706 Score = 105 bits (116), Expect = 8e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || || || ||||| | || || || |||||||| ||||| Sbjct 95 CTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAA 154 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | | ||||||||| ||||| |||||| | Sbjct 155 AATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTGACATT 214 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| || || || | |||||||| ||||| || || || || || Sbjct 215 TTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGTTAGGGTCTTTAC 274 Query 46582 AAAGATTTGCATT 46594 ||||||||||||| Sbjct 275 AAAGATTTGCATT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565165434788040