Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq3473 241 5e-59 seq90 100 1e-16 seq2859 84.2 8e-12 >seq3473 Length=4258 Score = 241 bits (266), Expect = 5e-59 Identities = 714/1087 (66%), Gaps = 46/1087 (4%) Strand=Plus/Plus Query 53307 TCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGC 53366 ||||||| |||| || || |||||||| | ||| |||| ||| | | |||| Sbjct 1539 TCGACGAGAAGACACTCGCTCAGGCGCACACCACGGCCCGCATGCCGTTCATCCACCCGC 1598 Query 53367 ATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCC 53426 | |||| |||||||| || ||||| |||| ||||| | |||||| |||| |||| Sbjct 1599 ACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGACGGTCGGCTCGGTCATCC 1658 Query 53427 CGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCG 53486 |||| ||||| | ||||| || |||||||||||||| || |||||||| ||||||| Sbjct 1659 CGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACATCGGCTGCGGGATGATCG 1718 Query 53487 CAGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCAAGCTGTCGGATCTGCGGG 53546 | | || || ||| |||| || ||| | || || | ||| | || || |||| Sbjct 1719 CCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTCGGCTCGCCGACCTCCGGG 1778 Query 53547 AGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATACAA---CAAGAGCCTG--AA 53601 || ||||||| ||| ||||| || ||||| | ||||| |||| | || | Sbjct 1779 AGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACAACCGCAAGGTCGTGGCCA 1838 Query 53602 CCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCTCGTCGCTACCCGGTTCGA 53661 ||| || ||| |||| | | |||| |||||||| || | | || Sbjct 1839 CCG--CGGA----ACC-GCGCATCACCGAGCTGG-AGCAGCTCGCCGAGA---AGAACGG 1887 Query 53662 CGTCGACCTGTCTC---ACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGG 53718 | |||||| | | | || || ||| ||||| |||| | |||||||| || || Sbjct 1888 CTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGGGCACGCTCGGTTCAGG 1947 Query 53719 CAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGCGTGTGGTTGTTCCTGCACTC 53778 ||| |||||||||||| ||| |||| | ||||| || || ||| ||||||||||||| Sbjct 1948 CAACCACTTCATCGAGGTGTCGGTCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACTC 2007 Query 53779 CGGTTCGCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAG-GGCT 53837 || ||||| |||||||| ||||||||||| | | ||||| | ||| ||| ||| Sbjct 2008 GGGCTCGCGAGGCGTCGGCAACAAGATCGCCGGGCACCACATCGCCGTCGCCCAGCGGC- 2066 Query 53838 ATTGCCTCGCCAATG--GGCTGCACGTGCCACACAAGGATCTGGCGTACCTCGTCGAGGG 53895 || | | || || || | || | || || || ||||| ||||| |||||||| Sbjct 2067 --TGGCGAGGCAGTGGTGGATCGACCTTCCCGACCCCGACCTGGCATACCTGGTCGAGGG 2124 Query 53896 CACGGTCGAGTTCGACCGCTACCTCGTTGAATTACGTTGGGCGCAGCGGTTTGCG-TACT 53954 ||| |||||| ||||||| || || | || ||||| |||| || ||| | || Sbjct 2125 CACACCGGAGTTCACCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCT 2184 Query 53955 ACAACCGCGCCGAAATGATGGACCG----ATTCGAGCAGGCGTTCCGCCATTGGGTCGGC 54010 ||||| | || |||||||| || || || ||||| || || | | |||| Sbjct 2185 -GAACCGGGAGGAGATGATGGATCGCGTCATCCG-GCAGGTGT--CG-GAGTTCCTCGGA 2239 Query 54011 GCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATCAACGCGCACCACAACTACACGCAG 54070 || || | ||||||| |||||||||| ||| || Sbjct 2240 ACC--CCGGTCGACGAACAGGAGCG-------CATCAACTGCCACCACAACTTCACCGAG 2290 Query 54071 AAGGAGCGGCACGGCGACCGTGACGTGTGGTTGACCCGTAAGGGTGCGATCGACGCGAAC 54130 |||| |||| || | |||||| || | || ||||| || ||| | ||| || Sbjct 2291 TCGGAGAAGCACTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGAC 2350 Query 54131 GAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGC 54190 | ||| | |||||| || || || |||||||| ||| || || || ||| || Sbjct 2351 GCCGGTCGACCGGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGTGGAAGGG 2410 Query 54191 AAGGGCAATCCCGAGGCGTTGTGCTCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGC 54250 ||| | || || || || ||| | ||||||||||| || || || ||| ||| Sbjct 2411 CTCGGCGACCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGC 2470 Query 54251 ACGAAGGCACGCAAGCTGTTCACGGTCGACGACCT-CGAAGCGCGTATGACGGGCATCGA 54309 || ||| || | |||||| |||| | || ||| ||| |||||||||||||| Sbjct 2471 TCGGCGGCGCGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCG-ATGACGGGCATCGA 2529 Query 54310 GTACCGCAAGGGCGAGGCGTGGGTCGATGAGATTCCCGACGCTTACAAGCCGATCGACGT 54369 || ||| | ||| || | |||| ||||| || | || ||||||||||||||| Sbjct 2530 GTTCCGTGACACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCA 2589 Query 54370 TGTGATG 54376 |||||| Sbjct 2590 GGTGATG 2596 >seq90 Length=95466 Score = 100 bits (110), Expect = 1e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 53373 CGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCG 53432 || ||||||| || | ||| | || |||||| || ||||| ||||| | || ||| Sbjct 11492 CGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCCACCATCGGCTCGGTGGTGCCCACCA 11551 Query 53433 AGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCGCAGCCC 53492 ||||| | |||||||||||||| ||||| || || ||||||||||||||||| ||| Sbjct 11552 TCGGCGCGATCATCCCGGCGGCCGTGGGCGTGGACATCGGCTGCGGCATGATCGCCACCC 11611 Query 53493 GCACCACG 53500 |||||||| Sbjct 11612 GCACCACG 11619 Score = 86.0 bits (94), Expect = 2e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 53339 ATCGCCGATCTGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCTGATGCGCATTTCGGT 53398 ||||||| |||| ||||| ||| |||||| ||||||| || | ||| | || Sbjct 70168 ATCGCCGCGGTGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGC 70109 Query 53399 AAGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCTGTGATCCCGGCGGCCGTC 53458 || || || || ||| |||||||||| ||| ||||| | || ||||| || ||| Sbjct 70108 AAAGGGGCCACCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTC 70049 Query 53459 GGCGTCGATATTGGCTGCGGCATGATCGCAGCCCGCACCACG 53500 ||||| || || |||||||||||| || | ||||||||| Sbjct 70048 GGCGTGGACATCGGCTGCGGCATGGCGGCGGTGCGCACCACG 70007 >seq2859 Length=8594 Score = 84.2 bits (92), Expect = 8e-12 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 1000 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGTTCGAGTCGTGCC 1059 |||||||||||||||||||||||||||||||| |||| ||||||| |||||| || || | Sbjct 3498 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTGTC 3557 Query 1060 GCGCCC 1065 ||||| Sbjct 3558 -CGCCC 3562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190568627107440