Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq3473 203 1e-47 seq90 89.7 2e-13 >seq3473 Length=4258 Score = 203 bits (224), Expect = 1e-47 Identities = 741/1151 (64%), Gaps = 50/1151 (4%) Strand=Plus/Plus Query 54019 TCGACGACCAGACCCTCGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGC 54078 ||||||| |||| ||||| |||||||| | ||| |||| ||| | | |||| Sbjct 1539 TCGACGAGAAGACACTCGCTCAGGCGCACACCACGGCCCGCATGCCGTTCATCCACCCGC 1598 Query 54079 ATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCC 54138 | |||| |||||||| || ||||| |||| ||||| | |||||| |||| |||| Sbjct 1599 ACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGACGGTCGGCTCGGTCATCC 1658 Query 54139 CGACCGAGNNNNNNNNNNNNNNNNNNNNNNTGGGCGTCGATATTGGCTGCGGCATGATCG 54198 |||| | |||||||| || |||||||| ||||||| Sbjct 1659 CGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACATCGGCTGCGGGATGATCG 1718 Query 54199 CGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCAAGCTGTCGGATCTGCGGG 54258 | | || || ||| |||| || ||| | || || | ||| | || || |||| Sbjct 1719 CCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTCGGCTCGCCGACCTCCGGG 1778 Query 54259 AGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATACAAC---AAGAGCCTGA--A 54313 || ||||||| ||| ||||| || ||||| | |||||| ||| | || | Sbjct 1779 AGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACAACCGCAAGGTCGTGGCCA 1838 Query 54314 CCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTACAGCTCGTCGCTACCCGGTTCGA 54373 ||| || |||| ||| | | |||| ||||||| || | | || Sbjct 1839 CCGCG--GA----ACCG-CGCATCACCGAGCTGGAG-CAGCTCGCCGAGAA---GAACGG 1887 Query 54374 CGTCGACCTGTCGCACTCCCC---GAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGG 54430 | |||||| | |||| | | | ||| ||||| |||| | |||||||| || || Sbjct 1888 CTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGGGCACGCTCGGTTCAGG 1947 Query 54431 CAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGTGTGGTTGTTCCTGCACTC 54490 ||| |||||||||||| ||| |||| | ||||| ||||| ||| ||||||||||||| Sbjct 1948 CAACCACTTCATCGAGGTGTCGGTCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACTC 2007 Query 54491 CGGTTCTCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAG-GGCT 54549 || || || || ||||| ||||||||||| | | ||||| | ||| ||| |||| Sbjct 2008 GGGCTCGCGAGGCGTCGGCAACAAGATCGCCGGGCACCACATCGCCGTCGCCCAGCGGCT 2067 Query 54550 ATTGCCTCGCCAACGG--GCTGCACGTGCCGCACAAGGATCTGGCGTACCTCGTCGAGGG 54607 | | | || || | | || | || || || ||||| ||||| |||||||| Sbjct 2068 ---GGCGAGGCAGTGGTGGATCGACCTTCCCGACCCCGACCTGGCATACCTGGTCGAGGG 2124 Query 54608 CACGGTCGAGTTCGACCGCTACCTCGTCGAACTGCGCTGGGCGCAGCGGTTCGCG-TACT 54666 ||| |||||| ||||||| || || ||||| ||||| |||| |||||| | || Sbjct 2125 CACACCGGAGTTCACCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCT 2184 Query 54667 ACAACCGCGCCGAAATGATGGACCG----ATTCGAGCAGGCGTTCAGGCATTGGGTCGGC 54722 ||||| | || |||||||| || || || ||||| || | | | |||| Sbjct 2185 G-AACCGGGAGGAGATGATGGATCGCGTCATCCG-GCAGGTGTC---GGAGTTCCTCGGA 2239 Query 54723 GCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATCAACGCGCACCACAACTACACGCAA 54782 || || | ||||||| |||||||||| ||| | Sbjct 2240 ACC--CCGGTCGACGAACAGGAGCG-------CATCAACTGCCACCACAACTTCACCGAG 2290 Query 54783 AAGGAGCGGCACGGCGACCGTGATGTGTGGCTGACCCGTAAGGGGGCGATCGACGCGAAC 54842 |||| |||| || | |||||| || | || ||||| || ||| | ||| || Sbjct 2291 TCGGAGAAGCACTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGAC 2350 Query 54843 GCCGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTG-ACCGG 54901 |||||| | |||||| || || || |||||||| ||| || || || ||| | || Sbjct 2351 GCCGGTCGACCGGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGTGGAAGGG 2410 Query 54902 CAAGGGTAATCCCG-AGGCGTTGTGCTCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCGC 54960 | || | |||| || || || ||| | ||||||||||| || || || ||| | Sbjct 2411 CTCGGCGA--CCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCC 2468 Query 54961 GCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCT-CGAGGCGCGTATGGCGGGCATC 55019 || || |||||| | |||||| |||| | || |||| ||| ||| |||||||| Sbjct 2469 GCTCGGCGGCGCGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCG-ATGACGGGCATC 2527 Query 55020 GAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAAGCCGATCGAC 55079 |||| ||| | ||| || | |||||||||| || | || ||||||||||||||| Sbjct 2528 GAGTTCCGTGACACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGAC 2587 Query 55080 GTCGTGATGCACGACGCCGAAACGCTGGTGTCGGTGGATGCCGAGCTGCGGCAGCTCTTG 55139 |||||| || |||| || || ||| | | |||||||||| || | Sbjct 2588 CAGGTGATGGCGGATGCCGCCGGACTCGTATCGATCCGGCACACGCTGCGGCAGATCGTC 2647 Query 55140 AACGTCAAGGG 55150 ||||| ||||| Sbjct 2648 AACGTGAAGGG 2658 >seq90 Length=95466 Score = 89.7 bits (98), Expect = 2e-13 Identities = 263/394 (67%), Gaps = 16/394 (4%) Strand=Plus/Minus Query 54765 CACCACAACTACACGCAAAAGGAGCGGCACGGCGACCGTGATGTGTGGCTGACCCGTAAG 54824 |||||||||||| ||| | ||| ||||| | | || || | ||||||| ||| Sbjct 69448 CACCACAACTACGTGCAGACCGAGACCCACGGTGGCGAGGAGCTGCTGGTGACCCGCAAG 69389 Query 54825 GGGGCGATCGACGCGAACGCCGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGT 54884 |||||| || |||| |||||| | | ||| | || |||||| |||||||| | Sbjct 69388 GGGGCGGTCAGCGCGCGCGCCGGCGAACTGGGGATCATCCCGGGCAGCATGGGCACGCGC 69329 Query 54885 TCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCGGC-GCCG-CACGGTG 54942 ||| ||||| |||||||| ||| ||||| | | | | || || | ||||||| Sbjct 69328 AGCTATATCGTGCGTGGCAAGGGCAATGCCGAGAGCT--TCCACAGCTGCAGCCACGGTG 69271 Query 54943 CGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCAC---GGTCGACGACCTCG 54999 | |||||| | | |||| ||||||| ||| | |||| || | | ||| || Sbjct 69270 CCGGCCGCGTGATGAGTCGCAGCGCGGCGCGCCAGCAGATCACCCTGGCCCAGCACCGCG 69211 Query 55000 AGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCG 55059 ||||| | ||| | | || | |||||||| | |||| | |||| || |||| Sbjct 69210 AGGCG---ACCGCGCACGTGGAATGCCGCAAGGATGCGGCGGTGATCGATGAATCCCCCG 69154 Query 55060 ACGCATACAAGCCGATCGACGTCGTGATGCACGACGC--CGAAACGCTGGTGTCGGTGGA 55117 || |||||| ||||||||| |||||| || ||| || || |||||| ||||| Sbjct 69153 CAGCCTACAAGTCGATCGACGCGGTGATGGCCG-CGCAGCGCGAC-CTGGTGGAGGTGG- 69097 Query 55118 TGC-CGAGCTGCGGCAGCTCTTGAACGTCAAGGG 55150 ||| | ||||| ||| | || | ||||||| Sbjct 69096 TGCACACCCTGCGCCAGGTGGTGTGCATCAAGGG 69063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191208548622240