Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq19 174 6e-38 seq426 107 8e-18 seq396 96.9 1e-14 seq122 93.3 2e-13 >seq19 Length=879724 Score = 174 bits (192), Expect = 6e-38 Identities = 257/361 (71%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| |||| ||||| | ||| |||| ||||||||| |||| || ||| | | | Sbjct 539520 CTCCACAAGAGATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAGACTTTT 539579 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | ||| ||| ||||| || || || || ||||| |||||||||||||| ||||||| Sbjct 539580 TAGGTCAGGAAGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACGCACAAC 539639 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | || || || ||||| || || | ||||| ||||||| ||| | || ||||| | Sbjct 539640 GTCAGGCTACAAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCATTAACG 539699 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 ||||||| ||||| ||| |||| ||||| | ||| ||| | ||| |||| | | Sbjct 539700 AACCTACTGCAGCGGCTTTAGCCTATGG-TTTGGA----TAAAGCACACA-AAGACATGA 539753 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | ||| | || ||||| | |||||| || || ||||| ||||||| | | | | | Sbjct 539754 AAATTGTTGTGTTTGACTGTGGTGGTGGTACACATGACGTTTCTGTATTGGAACTGGGTG 539813 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| || ||||||||||| |||| | |||||||| || || || ||||| || ||| Sbjct 539814 ATGGTGTTTTTGAAGTAAAATCAACTGACGGTGATACCCACCTGGGTGGTGATGACTTTG 539873 Query 451602 A 451602 | Sbjct 539874 A 539874 Score = 96.9 bits (106), Expect = 1e-14 Identities = 187/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 63793 AACTTGTTAAATTGATCCTCTAATTTAAATGCTTCTTCAGTAAATTGTTTAGTATC--CT 63850 ||||| ||| || |||| ||| ||| |||| || |||||| ||||| | || Sbjct 120189 AACTTATTATATAGATCAACTACTTTTTTGGCTTTATCTTTAAATT---TAGTAGCGTCT 120133 Query 63851 TAT-CACTCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCA 63909 | || ||||||| | ||||||||||| || ||| || | | || ||||||||| Sbjct 120132 GCTGCAGTCCACCAGTCTTTTAAATTACCCTCTTTGTCATATTGTCTGCCCTGATCATCA 120073 Query 63910 AACCCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCAATC 63969 || ||||| || ||||| || | || || | ||||| | |||||||| || || Sbjct 120072 AATCCATGGGTCATTTCGTGTCCAATTACAGCACCAATAGCACCATAATTGATCGC-GTC 120014 Query 63970 GTATAATCTAAACT-aaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATT 64028 | | || ||| | ||| ||||| ||| | ||| | || || ||||| |||||| | Sbjct 120013 ATCTGCTCCAAAATCAAAGAAAGGGAATTGAAGAATTCCGGCAGGGAATACGATTTCA-T 119955 Query 64029 TAATA-AAGGATGATAATAAGCATTTAC 64055 ||||| | |||| ||||||||||||||| Sbjct 119954 TAATAGATGGATTATAATAAGCATTTAC 119927 >seq426 Length=101737 Score = 107 bits (118), Expect = 8e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 391041 TATA-TTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGT 391099 |||| ||| |||| | || || || || || || ||||| || || || || ||||| || Sbjct 296 TATACTTACAATGCAAATCTTTGTAAAGACTCTAACTGGCAAGACCATCACCCTTGAGGT 237 Query 391100 TGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCC 391159 ||| ||||||| || ||| | | || || |||||||| ||||| || ||||| Sbjct 236 TGAGGGTTCTGATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGTATTCC 177 Query 391160 TCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGC 391219 |||||| || || ||| |||||||| | || || ||||| || ||||| | || | | Sbjct 176 TCCTGACCAGCAGCGTCTAATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTC 117 Query 391220 GGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| |||||| | ||||| | || || ||| Sbjct 116 TGATTACAATATTCAGAAGGAGTCCACTCTCCAC 83 >seq396 Length=82706 Score = 96.9 bits (106), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 391034 AATATATTATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCT 391093 ||||||| || || |||| | || || || || || || ||||| || || || || || Sbjct 300 AATATATAAT--TACAATGCAAATCTTTGTAAAGACCCTAACTGGCAAGACCATCACCCT 243 Query 391094 TGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGG 391153 || ||||| || |||| || ||| | | || || |||||||| ||||| || Sbjct 242 AGAGGTTGAGGGTTCCGATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGG 183 Query 391154 AATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213 ||||||||||| || || ||| | |||||| | || || |||||||| ||||| | || Sbjct 182 TATTCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAACTTGAGGATGGCCGCAC 123 Query 391214 TTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 | | ||||| ||||| | ||||| | || || ||| Sbjct 122 CCTTTCTGATTACAATATCCAGAAGGAGTCCACTCTCCAC 83 >seq122 Length=15855 Score = 93.3 bits (102), Expect = 2e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 412267 AAAGTT-ATACTTACACCCTTTTTTCCAAAACGACCACTTCTACCAATTCTATGTATAAA 412325 |||||| ||| ||||||||| |||| ||||||||| ||| ||||||||||| ||| | Sbjct 2280 AAAGTTGATAGCAACACCCTTTCTTCCGAAACGACCAGATCTTCCAATTCTATGGATATA 2339 Query 412326 AGTTTCATGATTTTTAGGTAAATCATAATTTATAACTAATTTAACCTCAGGAATATCTAT 412385 | | ||| ||| ||||| ||||||||||| ||||| | | |||| | | ||| || Sbjct 2340 ATTCTCACGATCGTTAGGCAAATCATAATTGATAACAAGTGATACCTGTTGTACATCGAT 2399 Query 412386 CCCCCGTGCTAATAAATCAGTTGTTAATAA 412415 || | ||| || | ||| || | |||||| Sbjct 2400 TCCTCTTGCCAAGATATCTGTAG-TAATAA 2428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975456983437316