Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1164 147 2e-29 seq19 143 2e-28 seq833 100 2e-15 seq114 86.0 5e-11 >seq1164 Length=91045 Score = 147 bits (162), Expect = 2e-29 Identities = 399/606 (66%), Gaps = 15/606 (2%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT--GGTTTTTATCAA 518174 ||||| ||||||| ||||| ||||| || | || ||||| || ||| | | Sbjct 37224 GTTCCTCCACCCAGGTCAAAGATAAGCACCTGGTGCTCCTTGTCCGACGGCTTTC--CCA 37167 Query 518175 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 518234 | ||||| || | || || ||||| ||||| || ||||| | |||||| || || | Sbjct 37166 GTCCATAGGCCATGGCGGCGGCAGTCGGTTCGTTGATAATGCGCAAAACGTTGAGTTTGG 37107 Query 518235 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 518294 ||||| ||| || || || ||||| || | ||| || |||||||| || || || || | Sbjct 37106 CAATTACTCCGGCGTCCTTGGTGGCCTGGCGTTGGGAGTCGTTAAAGTAGGCGGGTACGG 37047 Query 518295 TAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTAC 518354 | | |||||| | ||| || || | || || || || | ||||| || Sbjct 37046 TGACAACGGCGCTGGATACCGGTTCTCCGAGGTAGGCCTCGGCAGTCTCCTTCATCTTGG 36987 Query 518355 TTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATA 518414 | || | ||| || || |||| ||||| || ||| ||||| |||| || || | Sbjct 36986 TCAACACCATCGAAGAGATTTCCTCTGGAGAGAATTCCTTGGTTTCACCTTTGTAGACGA 36927 Query 518415 CTTCAAAATATGGTT--TATTACCAACATTA-ATAACTTTAAATGGCCAGTATTTCATAT 518471 ||| | ||||| | || | | || ||||||||||||| |||||| | Sbjct 36926 CTTGGATGTATGGACGGTCTTGGGGGGTCTGGACCACCTTAAATGGCCAGTGTTTCATGT 36867 Query 518472 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 518531 | || || || | || || | | |||||| ||||| || || ||||| || | Sbjct 36866 CGGACTGGACGACCGGCTCGGAGAACTTGCGACCAATCAATCGCTTGGCGTCAAAGATGG 36807 Query 518532 TATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCT 518591 | |||| ||||| ||||| |||| | ||||| | || ||||||| |||| || Sbjct 36806 TGTTGGCAGGATTCATTGCCACTTGGTTCTTGGCAGAGTCGCCAATCA----TTCTCTCG 36751 Query 518592 CTGTAAATGAA----ACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 518647 ||| | |||| ||||| || || || || | |||||| || ||||| ||||||||| Sbjct 36750 GTGTCATTGAATGCCACATAGGAAGGTGTGGTTCTATTACCCTGGTCATTGGCAATAATT 36691 Query 518648 TCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCA 518707 || || ||||| | | || | |||||| | || ||||| |||||||| ||| Sbjct 36690 TCCACACGTCCATTCTTCAGGACCGCAACACAAGAGTAGGTAGTTCCCAAATCAATTCCA 36631 Query 518708 ATAGCA 518713 || ||| Sbjct 36630 ATGGCA 36625 >seq19 Length=879724 Score = 143 bits (158), Expect = 2e-28 Identities = 253/366 (69%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| |||| | |||| || || | | |||||| |||| ||| Sbjct 539874 TCAAAGTCATCACCACCCAGGTGGGTATCACCGTCAGTTGATTTTACTTCAAAAACACCA 539815 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || | || ||| | || || ||||| || |||||||| ||||| | || | Sbjct 539814 TCACCCAGTTCCAATACAGAAACGTCATGTGTACCACCACCACAGTCAAACACAACAATT 539755 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||||| ||||||| | |||||| | |||||| || ||||| || ||||| ||||| Sbjct 539754 TTCATGTCTTTGTGTGC---TTTATCCAAACCATAGGCTAAAGCCGCTGCAGTAGGTTCG 539698 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || || ||| | | ||| ||||| || || ||||| || || || | | Sbjct 539697 TTAATGATCCTTTTTACAGTTAAACCTGCAATCTCACCAGCCTCTTTTGTAGCCTGACGT 539638 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 |||| || || ||||| |||||||| || || || || ||||||||||| | ||| || Sbjct 539637 TGTGCGTCATTGAAATAAGCAGGAACTGTGATCACAGCTTCAGTTACTTCCTGACC--TA 539580 Query 518327 TAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 || ||| || |||| ||||||||| | |||||||| ||||| | || ||| | Sbjct 539579 AAAAGTCTTCGGCAGTTTTTTTCATTTTCTGCAGAATCATTGCAGAAATCTCTTGTGGAG 539520 Query 518385 AATATT 518390 ||||| Sbjct 539519 TATATT 539514 >seq833 Length=35181 Score = 100 bits (110), Expect = 2e-15 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 || |||||||||| |||||||| || || || | || || | | |||||| Sbjct 19946 TTGAATGGCCAGTGCTTCATATCGGACTGGACGACGGGATCGGAGAACTTGCGACCAATC 19887 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 || || || || || || | ||| ||||| || || || ||| | || | ||||| || Sbjct 19886 AAACGCTTGGCGTCGAATACAGTGTTGGTGGGGTTCATCGCAACCTGGTTCTTGGCGGCG 19827 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 |||||||||| | | || | || ||||| | ||||| || || || | ||| ||| Sbjct 19826 TCTCCAATCAAACGCTCAGAATCGGTAAAGGCGACATAGCTAGGTGTAGTTCTATTTCCT 19767 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 || || || |||||||||||||| |||| ||||| ||||||| | | |||||| Sbjct 19766 TGGTCGTTGGCAATAATTTCAACACGGTCATTCTGCCAGACACCTAAATTATTAAAAG 19709 >seq114 Length=372606 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 322238 CCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAA 322297 |||||||| || ||||| |||||||||||||||||| | ||| | ||||| || Sbjct 293888 CCTAAACCATAGGCAAGGCTTGCTGCAGTTGGTTCATTGACTATACGTAATACATCCAAT 293947 Query 322298 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 322357 || || | ||| | | |||| | || || || | ||| |||||||||||| || || Sbjct 293948 CCGGCCAGTTTGCCGGCATCACGTGTAGCCTGACGCTGGCTGTCATTAAAATAAGCAGGA 294007 Query 322358 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAA 322392 |||||||| ||||| |||| ||| ||| ||| Sbjct 294008 ACAGTAATGACTGCCCGGTTAACTGGTGTTTTTAA 294042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780309940242862