Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq44 214 2e-50 seq1288 132 6e-26 seq972 98.7 1e-15 >seq44 Length=77107 Score = 214 bits (236), Expect = 2e-50 Identities = 493/735 (67%), Gaps = 12/735 (2%) Strand=Plus/Plus Query 111621 ATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACA 111680 ||| ||||||| ||| | |||||||||| || || || ||||| | | | || || Sbjct 9213 ATGCTCATGCGTGTCTCTCTCGGTATCCACGGCGATGACATTGACGCCGCCGTCGAAACC 9272 Query 111681 TACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGT 111740 ||| || || | || || | || | ||||| || ||||||||||||||| | ||| Sbjct 9273 TACCACCAGCTCTCGAAGCGTCTCTTTACGCACGCCACGCCAACCCTCTTCAACTCGGGT 9332 Query 111741 ACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAAT 111800 || || | |||||| |||||| ||| ||||| | | |||||||| ||| | Sbjct 9333 ACCCCCACACCCCAGATGTCCTCTTGCTTCCTCGTCCAGATGAAGGAGGACAGCATCGAC 9392 Query 111801 GGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGG 111860 || || |||| || || | | || |||| |||||||||| || |||||| |||| Sbjct 9393 GGTATCTACGAGACACTTAAGCAGTGCGCCCTCATCTCAAAGTCTGCCGGTGGTCTCGGT 9452 Query 111861 ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCA 111920 || |||||| | || | |||| | || || | ||||| || || || Sbjct 9453 ATCGCCATCCACAAGATCCGTGCCAGCCGCTCCTACATCCGCGGTACCAACGGCACCTCG 9512 Query 111921 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCT 111980 | || | | |||||||||||||| || || | ||| || ||||| || |||| | | Sbjct 9513 AACGGACTCGTACCAATGCTTCGCGTCTTCAATGACACTGCCCGCTACGTCGACCAGGGT 9572 Query 111981 GGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATG 112037 || | |||||||| | | || ||||| || |||||||||||||| || || | Sbjct 9573 GGCGGAAAGCGCAAGGGTGCCTTTGCCGTCTACCTCGAGCCATGGCACGCCGACGTCTTT 9632 Query 112038 GAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTC 112097 ||||||||||| | || ||||| || | |||||| ||| |||||| |||||| Sbjct 9633 GAGTTCCTTGATCTTCGCAAGAACCACGGCAAGGAGGAGATGCGTGCCCGCGACCTCTTC 9692 Query 112098 TCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCT 112157 | ||| |||||| | | ||||| |||||| || | || ||| | | ||| | Sbjct 9693 TACGCGCTCTGGGTCTCTGATCTGTTCATGGAGCGTGTCGAGACCAACTCTGACTGGAGT 9752 Query 112158 CTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGC 112216 ||||| ||||| | ||||||| || ||| |||| ||| | ||| || ||||| | Sbjct 9753 CTCTTCTGTCCCAATGAGGCACCTGGCCTCGCCGAGTGCTG-GGGAGATGAGTTCCGCGA 9811 Query 112217 CCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACT-GCG----ACGGTGCCAGCTGCC 112271 |||||||| ||||| |||| || | | ||| || || || || ||| Sbjct 9812 GCTCTACACCAAGTATGAGG-CGACA-CCTGGCCTCTCTCGTCGCACCGTAAAGGCTCAG 9869 Query 112272 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTAC 112331 ||| | ||| ||||| || |||| || | |||||| ||||| || || || || ||| Sbjct 9870 GATCTCTGGTTCGCTATCATCGAGTCACAGATCGAGACCGGTACCCCCTACATCCTCTAC 9929 Query 112332 AAAGACGCCTGTAAC 112346 || ||||| || ||| Sbjct 9930 AAGGACGCTTGCAAC 9944 Score = 116 bits (128), Expect = 5e-21 Identities = 305/457 (67%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946 ||||| || |||||| | || | ||||| ||||| || ||||| ||| | || ||| | Sbjct 10494 GGTCTCCGCAACAGTTTGATGGTTGCACCCATGCCTACCGCCTCGACCTCTCAGATCCTC 10553 Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCG 113006 || || || || || ||||| ||||| | |||||||| | | |||||| Sbjct 10554 GGAAACAACGAGGCGTTCGAACCGTACACCAGCAACATCTACAGTCGTCGCGTCCTCGCC 10613 Query 113007 GGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 113066 |||||||| | ||||||||||| || | | ||||||| ||| ||| |||||| Sbjct 10614 GGAGAGTTCACTGTCGTCAACAAGCAGCTGCTCAAGGACCTCATGGAGCTTGACCTCTGG 10673 Query 113067 TCCAAGGATATGAAGGATC---TCATGG-TGA-AAGCGGGTGGTTCCATTCAAAATATTG 113121 | || |||||| | | |||| | | | ||| |||||||| || || || Sbjct 10674 ACACCAGAGATGAAGAACCAGATCATCGCTCACAAG-----GGTTCCATCCAGAACATCC 10728 Query 113122 TGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGG 113181 || ||||| || || | ||| || | ||| || || ||||| ||| | | | Sbjct 10729 AGGGCATTCCTGACGAGTTAAAGGAGCTCTACAAGACTGTCTGGGAGATCC-GTCAACGT 10787 Query 113182 ATG-TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAAT 113240 | |||| |||||||| || || |||||| ||| || || || || || | || Sbjct 10788 ACCCTCATCGACATGGCTGCCGACCGTGGTGCCTTTATCGACCAGAGCCAGTCGTTCAAC 10847 Query 113241 CTATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAA 113299 | ||||| | || | ||| || ||||| | |||| |||||| | ||| |||||| Sbjct 10848 GTGTTCATCGCCGAGCCAAACTTTG-CCAAGTTGACTTCAATGCACTTCTACGCTTGGAA 10906 Query 113300 GAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCT 113336 ||||||||| || || || ||||| |||||| || || Sbjct 10907 GAAGGGTCTGAAGACTGGAATGTACTACCTCAGAACT 10943 >seq1288 Length=22276 Score = 132 bits (146), Expect = 6e-26 Identities = 209/299 (70%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 102033 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTC 102092 ||||| |||||| || || |||| || || ||||| || ||| |||||| Sbjct 375 GAGACGTACAGTCTGCTGATCGACACCTACATCAAGGACACCGCGCGCAAGGCCCAGCTC 434 Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 || | |||||| | || | || | | ||||| || || ||||| || ||| Sbjct 435 TTCAACGCCATCGAGACGATCCCCGCCGTGCGCAAGAAGGCCGAGTGGGCGATCCGCTGG 494 Query 102153 TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGT 102212 | || ||| ||||| |||||| ||||| ||| |||| ||||| || ||||| Sbjct 495 ATCGA---AAACTCGCGCAGCTTTGCCGAGCGCCTCGTCGCGTTTGCCGCCGTCGAGGGC 551 Query 102213 ATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCA 102272 ||||||||||| || || |||||| | || | |||||||||||||| || ||||||| Sbjct 552 ATCTTCTTCTCGGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCAC 611 Query 102273 GGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||| |||||| |||||||| ||| || |||||||| |||||| || ||||| Sbjct 612 GGCCTCACCTTCTCGAACGAGCTGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC 670 >seq972 Length=14960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || || || |||||||| || |||| ||||||||| || |||||||| ||| | Sbjct 1085 CCGACAGCGTCGATCTCATCGATAAAGATGATGCATGGCGCGTTCTCGCGAGCCTCTTTA 1144 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 ||||| || || || || | || ||||| ||||||||||| | ||||| | | | Sbjct 1145 AAGAGTTCACGCACTCGAGACGGACCAACACCGACAAACATCTCGATAAAGTCAGAGCCA 1204 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| || | | ||| || || || || || || || | || ||||| |||||||| Sbjct 1205 GAA-ATGGTAAAGAATGGAACCTTTGACTCGCCAGCGGTTGCCTTTGCGAGCAGAGTCTT 1263 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||| || || || || |||||| |||||| || ||||||||||| Sbjct 1264 ACCGGTGCCAGGTGGTCCGACGAGGATGGCACCCTTGGGGATCTTGGCGCC 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620662269915440