Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq44 156 5e-33 seq972 138 1e-27 seq19 129 7e-25 seq712 89.7 6e-13 >seq44 Length=77107 Score = 156 bits (172), Expect = 5e-33 Identities = 310/451 (69%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 109411 AGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGT 109470 || || ||||| || || || ||||| |||||| ||||| | |||||||||| | Sbjct 10936 AGGTAGTACATTCCAGTCTTCAGACCCTTCTTCCAAGCGTAGAAGTGCATTGAAGTCAAC 10877 Query 109471 TTGG-AAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATC 109528 |||| ||||| | | ||| | || |||| ||| | |||||| ||| ||||| || Sbjct 10876 TTGGCAAAGTTTGG--CTCGGCGATGAACACGTTGAACGACTGGCTCTGGTCGATAAAGG 10819 Query 109529 GACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTTCCCAGACAGTCT 109585 |||||| || || ||||||||||||| ||| ||| | || ||||||||||||| Sbjct 10818 CACCACGGTCGGCAGCCATGTCGATGAGGGTACG---TTGACGGATCTCCCAGACAGTCT 10762 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCT 109645 |||| | | ||| | || || |||||| || |||||| || || || || | | | Sbjct 10761 TGTAGAGCTCCTTTAACTCGTCAGGAATGCCCTGGATGTTCTGGATGGAACC-CTTG--T 10705 Query 109646 TCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAA 109702 | |||| | | |||||||||| | |||||| | | || |||| || | | Sbjct 10704 GAGCGATGATCTGGTTCTTCATCTCTGGTGTCCAGAGGTCAAGCTCCATGAGGTCCTTGA 10645 Query 109703 CAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 || ||||||||||| || || || || || || ||| || ||||||||| Sbjct 10644 GCAGCTGCTTGTTGACGACAGTGAACTCTCCGGCGAGGACGCGACGACTGTAGATGTTGC 10585 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 | ||||| |||||||| ||| ||||| || ||||| || | || || || || |||| Sbjct 10584 TGGTGTACGGTTCGAACGCCTCGTTGTTTCCGAGGATCTGAGAGGTCGAGGCGGTAGGCA 10525 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 |||| || | | | |||||| |||||||| Sbjct 10524 TGGGTGCAACCATCAAACTGTTGCGGAGACC 10494 >seq972 Length=14960 Score = 138 bits (152), Expect = 1e-27 Identities = 276/404 (68%), Gaps = 9/404 (2%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||||||||| || || || |||||| || || | |||| |||||| || ||||| Sbjct 917 TCGAAACGACCCGGCCGCAGAAGAGCAGAGTCTAGCACATCGGGACGGTTGGTGCCGGCA 976 Query 11566 ATGACTACAATGCCAGTCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 | || || | ||| ||| || | || |||||||| || || || || |||| Sbjct 977 AACACGACGACGCCC-TCTGTGGTGCCAAAGCCGTCCATCTCGACCAGCAGTTGATTGAG 1035 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTT--ACCGACA 11682 || | || || || || ||| | | || || ||| ||| ||||||| Sbjct 1036 GGTATTCTCGCGTTCGTCATTGTGG---AAGCCTCCG--CGAGATCTTGAGCGACCGACA 1090 Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742 ||||| ||||||||||| || | ||| || || ||| | || |||| || || ||| Sbjct 1091 GCGTCGATCTCATCGATAAAGATGATGCATGGCGCGTTCTCGCGAGCCTCTTTAAAGAGT 1150 Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACAC 11802 ||||| || || || |||||||| || |||||||| | |||| | | ||||| Sbjct 1151 TCACGCACTCGAGACGGACCAACACCGACAAACATCTCGATAAAGTCAGAGCCAGAAATG 1210 Query 11803 TGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTA 11862 || ||| ||||| || ||||| |||||| | || ||||| ||||||||||| || Sbjct 1211 GTAAAGAATGGAACCTTTGACTCGCCAGCGGTTGCCTTTGCGAGCAGAGTCTTACCGGTG 1270 Query 11863 CCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||||| || |||| | ||| || |||||||||||| || Sbjct 1271 CCAGGTGGTCCGACGAGGATGGCACCCTTGGGGATCTTGGCGCC 1314 >seq19 Length=879724 Score = 129 bits (142), Expect = 7e-25 Identities = 1021/1643 (62%), Gaps = 36/1643 (2%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||||||||| || ||||| | ||| ||||| || || | |||||| |||| Sbjct 586525 CGCAGATAATACATTCCGGTTTTCAAACCTTTTTTCCAGGCATAGAAATGCATAGAAGTC 586466 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 |||||||| | || | ||||||| ||||| || || ||||| |||| | Sbjct 586465 AGTTTGGATGTATTTGGTGCATTGATAAACAGGTTCAGGGATTGCGACTGGCAGATGTAG 586406 Query 109528 CGACCACGATCAGCCGCCATGTC---GATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 ||| || || || ||||| || |||| | | | ||| |||||||||| || || Sbjct 586405 GCACCGCGGTCGGCTGCCATATCAATGATGCTGCGCATTT---TAATTTCCCAAACTGTT 586349 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||||| | || |||| ||| ||||| || | |||| |||||||| || ||| Sbjct 586348 TTGTACAGTTCTTTAATATAATCCGGAATCTCGGCAATGTCCTGAATAGAACCGTTCGCC 586289 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATC-GTCAAC 109703 | || || |||||| | | ||| | || | || || | ||| Sbjct 586288 AGAATAATTCTGTCTTTCATCGCAGGTGTCCATAAGCCTAGGGCCACCAGGTCTTTTAAC 586229 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 ||| |||||||| || || | ||| || || | | | || | || ||||| | Sbjct 586228 AAG-TGCTTGTTCACGACAATAAACTCTCCGCTCAATACCCTTCTGGTATAAATGTTTGA 586170 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 ||||| || || ||||||||||||||||| ||||| || | ||||||||| || ||||| Sbjct 586169 AGTGTAAGGCTCAAAACACTCATTGTTGCCCAGGATCTGAGAAGTGGAAGCCGTTGGCAT 586110 Query 109824 GGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT----TACCCGCTCACGCATTG 109879 || |||| || || ||| | | || | ||| || ||| ||||||| || Sbjct 586109 TGGCGCCACCAGCAGGGAGTT--GTACACGC--CGTTTTTGACTACTTTTTCACGCAATG 586054 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 ||||| || | || || | | || | ||| ||| | || || | | Sbjct 586053 TTTCCCAGTCCCAGCGGTTGCT--GTCTGGT-TGTACATTCCATAGGTCAAACTGGAATT 585997 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 ||| || | |||||||| |||||| ||| ||| | || | | |||| | Sbjct 585996 TACCTTCTGACAATGGAGAACCTTTGAAAGTCTGGTAAGGACCATGTTTAACAGCCAGGT 585937 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 | ||| ||| | || || ||| || || |||||||| | ||| | | Sbjct 585936 CATGTGAGGCCGTCATGGCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTT 585877 Query 110060 GAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 | | |||||| || || || | || || ||||| |||| || | ||||| | Sbjct 585876 TTGCCCCTTCACTTTCAAATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTA 585817 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAA 110179 |||| | ||||| || | || |||||| || | ||| ||||| || ||| Sbjct 585816 CACCTAAACCAACTGGTCTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAAT 585757 Query 110180 AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTT 110239 | || | || || | ||| || ||| || | | || | |||| | || Sbjct 585756 AATTATGATCAATAATTTTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATT 585697 Query 110240 TGTCGTAATCGAACGTTTTCGTCTCC-TTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 | | | ||| ||| ||||| || ||||| || | || | ||| | || || Sbjct 585696 TCTGATGATCAAAC-------TCTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCC 585644 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 || || || |||| | |||||||||| || || || | |||||| ||||| | |||| Sbjct 585643 AGGTTACATACAGCAACCTCGTCTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTG 585584 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 ||||| || ||| || || || | ||| || |||||| ||| |||||| ||||| Sbjct 585583 GAACTTTTGATGGTTCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATAC 585524 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCG 110478 | || || ||||| || ||||| ||||||| | |||||||| ||| | || Sbjct 585523 AACAGATAAGGGGTTCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGT 585464 Query 110479 GCGGGGACAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCA 110535 || | ||| ||| || | ||||| | ||||| || || | || Sbjct 585463 GCTTTAATGGTT---TTACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCG 585407 Query 110536 AATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAA 110595 ||||| || | ||| | || ||| || | | |||||||| | ||| Sbjct 585406 AATTCTGCACCAAAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAG 585347 Query 110596 TTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGG 110655 | ||| || || ||||| |||||||||||||| | ||| | || |||| | Sbjct 585346 TCTCCGTTTTCTTCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAA 585287 Query 110656 TCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATA 110715 || | | |||| ||||| | ||| ||||| || || |||| ||| || | | Sbjct 585286 TCTCTGGCACGAAGTTCTTCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCACA 585227 Query 110716 TCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGG 110772 || | |||||||| || || || | || | | || ||||| || || ||||| Sbjct 585226 TCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGG 585167 Query 110773 TTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGA 110832 | ||||| || || || | || || || | | |||||| | ||| |||| | Sbjct 585166 TCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTC 585107 Query 110833 CCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATA 110892 || ||||| || | ||| || ||||||| |||| ||||| | ||||||| Sbjct 585106 CCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATA 585047 Query 110893 CCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATC 110952 ||||| || | | ||||| || | | | | ||| | ||||| || ||||| Sbjct 585046 CCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATA 584987 Query 110953 GAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCA 111012 || ||| ||| | || |||||| |||||||| ||||| ||| || | ||| Sbjct 584986 CTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCA 584927 Query 111013 TTGAAGAGTGTAGGTGTCGCATG 111035 || || | || || || ||||| Sbjct 584926 TTAAATAAAGTTGGGGTTGCATG 584904 >seq712 Length=105793 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/244 (70%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCT 11607 |||||| || || || || || | ||||| ||| ||||| || || |||||||| || Sbjct 53031 ACGGTTGGTTGCAGCGATCACGATGATGCC-GTCGTTCATT-TCAAAGCCGTCCATCTCA 52974 Query 11608 GTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCG 11665 || | |||||| | |||||| ||||||||||| | || || ||| || || Sbjct 52973 ACCAGCAACTGGTTAAGCGTCTGCTCACGCTCATCAT--GACCGCCGCCCATGCCGGCGC 52916 Query 11666 AACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCAC 11725 ||| | ||| || ||||| || ||||||||||| | ||| ||||| || | | Sbjct 52915 CACGATGGCGACCAACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCGT-GCTTC 52857 Query 11726 GTG-CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784 || |||||||||| | || || ||||| | || || ||||| || ||||| || ||| Sbjct 52856 TTGGCCTGTTCGAACATATCGCGAACACGGCTGGCACCTACACCGACAAACATTTCGACG 52797 Query 11785 AAGT 11788 |||| Sbjct 52796 AAGT 52793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588899970560600