Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq44 214 2e-50 seq1288 111 2e-19 seq1327 84.2 3e-11 >seq44 Length=77107 Score = 214 bits (236), Expect = 2e-50 Identities = 574/872 (66%), Gaps = 12/872 (1%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| ||||||| | |||||| || || | ||||| || || ||||| | ||| Sbjct 10072 ACAAACTTTGGCAAGGCGATAGAGGCGAGGTTGCACACGGCGACTTCATCGGGAGAGGTG 10013 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 |||| | ||| || || || | |||| | || || || | |||| ||||| Sbjct 10012 TACTGAACAATCTCGGTGCAAAGGTTGCTGCAAGAGATGGTTCCGAGGTTCTGCTGGTTG 9953 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| ||||||| || ||||||||||| |||||||| || || ||||| |||||||| Sbjct 9952 GACTTGCTGTTGCAAGCGTCCTTGTAGAGGATGTAGGGGGTACCGGTCTCGATCTGTGAC 9893 Query 106628 TTGAGAATTGCCTTCCACACATCG-GCGGCT----GGTACAATGGCGTTGGCCCGTCCCT 106682 | || || || ||| | ||| | | || ||| | | | |||| | Sbjct 9892 TCGATGATAGCGAACCAGAGATCCTGAGCCTTTACGGTGCGACGAGAGAGGCCAGGTGT- 9834 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCT 106741 |||||| ||||| |||||||| | ||||| || ||| | || |||| ||| || Sbjct 9833 -CGCCTCATACTTGGTGTAGAGCTCGCGGAACTCATCTCCC-CAGCACTCGGCGAGGCCA 9776 Query 106742 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAA 106801 ||||||| | |||||||| ||| ||| | | ||| || |||| |||||| Sbjct 9775 GGTGCCTCATTGGGACAGAAGAGACTCCAGTCAGAGTTGGTCTCGACACGCTCCATGAAC 9716 Query 106802 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 106861 || || | | ||| || | | ||||| || | || ||| || | || ||| Sbjct 9715 AGATCAGAGACCCAGAGCGCGTAGAAGAGGTCGCGGGCACGCATCTCCTCCTTGCCGTGG 9656 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || || | ||||||||||| | || || |||||||||||||| || ||||| || Sbjct 9655 TTCTTGCGAAGATCAAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACGGCA 9596 Query 106922 ATAGATCCCTTTCGA---CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 106978 | | ||||| || | ||| | || | || ||||| || ||| | || || ||| Sbjct 9595 AAGGCACCCTTGCGCTTTCCGCCACCCTGGTCGACGTAGCGGGCAGTGTCATTGAAGACG 9536 Query 106979 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 107038 ||||||||||| | | || | || || || || || || || || || Sbjct 9535 CGAAGCATTGGTACGAGTCCGTTCGAGGTGCCGTTGGTACCGCGGATGTAGGAGCGGCTG 9476 Query 107039 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 || | | | |||||| || || | ||| || || |||||||||| | || ||| Sbjct 9475 GCACGGATCTTGTGGATGGCGATACCGAGACCACCGGCAGACTTTGAGATGAGGGCGCAC 9416 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | |||| || | |||||||||| ||| ||||||||| | || ||||||||| Sbjct 9415 TGCTTAAGTGTCTCGTAGATACCGTCGATGCTGTCCTCCTTCATCTGGACGAGGAAGCAA 9356 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 ||||||||| ||| | || ||||| | |||||||||||||| || ||||| | || Sbjct 9355 GAGGACATCTGGGGTGTGGGGGTACCCGAGTTGAAGAGGGTTGGCGTGGCGTGCGTAAAG 9296 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | || | || | || || ||| || || | | | | |||||||| || |||||||| Sbjct 9295 AGACGCTTCGAGAGCTGGTGGTAGGTTTCGACGGCGGCGTCAATGTCATCGCCGTGGATA 9236 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||| | |||||||| | ||| | |||||| Sbjct 9235 CCGAGAGAGACACGCATGAGCATCTGTTGGGG 9204 >seq1288 Length=22276 Score = 111 bits (122), Expect = 2e-19 Identities = 149/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||| ||||| || ||| || || || || |||||| ||||| Sbjct 671 GGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAAGGTGAGGCC 612 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 611 GTGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGAT 552 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA 117452 ||||| || |||||||| | ||||||||||| ||| ||| || ||| || | Sbjct 551 GCCCTCGACGGCGGCAAACGCGACGAGGCGCTCGGCAAAGCTGCGCGAGTTT---TCGAT 495 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTT 117479 ||| || ||||| | |||||||| Sbjct 494 CCAGCGGATCGCCCACTCGGCCTTCTT 468 >seq1327 Length=12810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 |||||| || | ||| ||| |||| || ||||| | | || | || ||||| | | | Sbjct 227 AAAGAGGTCTCTAACTCTTCTGGCACCGACACCTATATACTTTTCGTCAAAGCTGGATCC 286 Query 9485 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 || | || ||||||||| | | ||| || || ||||| |||||||| || ||||| Sbjct 287 GGTGGTGTAGAGGAAGGGGACGTCGGCTTCTCCGGCGATGGCGCGGGCGAGGAGGGTCTT 346 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || || ||||||| |||| ||| ||| ||| || ||||||||||| Sbjct 347 GCCGGTGCCTGGCTCGCCCGAGAGCAGGATGCCCTTGGGCATCTTGGCGCC 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589904640853480