Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq406 390 3e-104 seq284 113 1e-20 seq401 87.8 5e-13 seq77 87.8 5e-13 >seq406 Length=38937 Score = 390 bits (432), Expect = 3e-104 Identities = 761/1104 (69%), Gaps = 25/1104 (2%) Strand=Plus/Minus Query 29850 ACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCGTTTACAAGGTGTGTTTTTTGA 29909 || ||||| || ||||| |||||||| || | |||||||| || | |||||||| || Sbjct 35217 ACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTCTGC 35158 Query 29910 GCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGCCAGGCAATCA 29969 ||||| ||||| || ||||| ||||||||||| ||||| | | || |||||||| ||| Sbjct 35157 GCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAGTCA 35098 Query 29970 GCAGGCTTCCCGGCGAGGTGGGCGGGTACTGTTGTTCTGCCCTGCGCCATGACCTCGGC- 30028 |||||||| || || ||||| || || || || | | | | ||||| | || Sbjct 35097 GCAGGCTTTCCTGCCAGGTGCGCAGGAACGGTGGCCTTACTGTCAGCCATCAGGGTTGCG 35038 Query 30029 AAACGCCTGTAGTTTTTGCA-GTCCTGACGGGCTAAATATTGCCGCTTTTGTGTC---GG 30084 |||||| || | || | ||| | ||||| || |||||||| ||| | || Sbjct 35037 AAACGCACC-AGGCGGTCCATGCCCTCA-GGGCTGAAGATTGCCGCAGCGGTGCCAACGG 34980 Query 30085 CCTCATTAGCCGGAC-TGTGAA--CAATTTCAGTGCTCATACGTA---ATCCTTTTTCTT 30138 | || | | ||||| | || || |||||||||||| ||||| ||| Sbjct 34979 TTGCGCCAGGCTGCGATGTGATTGCGATGTCGTTGCTCATACGTACATATCCTGTTTGCG 34920 Query 30139 CGCCCAGGCTGGGCGTGTGATTTCTTCAATGCCGCCCCA---GCTATCACTAACCCGGCA 30195 ||||| | |||||| |||| ||||| || ||||| || | ||| || |||| Sbjct 34919 TGCCCACTCGGGGCGTTTGATAATTTCAAATCCACCCCATTCGCCAG-ACTCAC--GGCA 34863 Query 30196 TTCGTGGTATGTGTTCAGACTGTTGCGGAATAAATCATGGCCTGTTGCCACATCATCCGC 30255 | |||||| || |||||| |||||| | |||| || | | || || | || Sbjct 34862 CTGGTGGTAGGTATTCAGATCCCGGCGGAACAGTGCATGCCCGGCGTCAACGTCCTGTGC 34803 Query 30256 AGCGAGCTGGAACGTCCGCACGGGATATCGACCGCAGTTGATCGTCTCGCTCACGGCAAT 30315 | | || | ||| ||||| || || || ||||||| ||| || |||||||| || | Sbjct 34802 ATCCAGTTCGAAAACGCGCACCGGGTAGCGGCCGCAGTCGATGGTTTCGCTCACTGCCAG 34743 Query 30316 AAAAATAAACATGGGATATTCGCCGAAGTGCTTCAGATACCCTTCGCGGTACATGGCGTC 30375 |||| || | | || ||| | || | | |||||||||||||||||||| Sbjct 34742 GAAAAAGAATCCGTGCGGCTCACCGGTGGTCTGCTGCGCGCCTTCGCGGTACATGGCGTC 34683 Query 30376 TTGCATGTGATAGCGGAATTCTTCGACATGTCGCGGGAATCGCTCCATATCTGCAACTTT 30435 || | ||| || |||||||| |||| || || | ||| |||||||| || ||||| || Sbjct 34682 CTGAACGTGGTACCGGAATTCCTCGATGTGGCGGGAGAACCGCTCCATGTCCGCAACCTT 34623 Query 30436 TTTCACGTCAACAACAACTGGCTGGCTAGTTAGAAACTTATCCGGCCTGAAT-CTGCACA 30494 || ||||| | | ||| || || | | || ||||||||| | |||| | ||||| Sbjct 34622 CTTTACGTCCAGCAGAACCGGATGATTCTTCAGGCGCTTATCCGGGC-GAATGCGGCACA 34564 Query 30495 GCTCCCCGGTTTCGTCATCATTCCAGTAGATAGAAGACTCGCAATGCCCGTCTGCCTCCA 30554 |||| |||||||| ||| |||||||| || | ||||| || || ||||| | Sbjct 34563 GCTCTCCGGTTTCCGAATCCGTCCAGTAGTGCGACGCTTCGCAGAAACCTTCCGCCTCAA 34504 Query 30555 GCAACCACCGTGCGGCGGGGTGGGATAGAGCACTCTCTCGCATTAACTTTAGCTTTATGC 30614 | | ||| || || || || |||| | || || || ||||| | || ||||| || Sbjct 34503 GAAGCCAGCGCGCCGCCGGATGGGCCATCGCGCTGTCACGCATAAGATTCAGCTTGCGGC 34444 Query 30615 CTTGCTCTGCATCCATAACCGTCATTCCAGATCTT-TCACAATCCCGGAGAAACCTGGCT 30673 | || || ||||||||||||||||| || || || || ||| || ||| ||| Sbjct 34443 CCTGTTCGGCATCCATAACCGTCATGCC-CATGTTCTCGACATCTTTCAGGAACGCTGCT 34385 Query 30674 TCTTCTTCCTTTCCTGC-GCTGGTCCGCCTGTTTACGTCTGGCCCCACAACAAAACGCTT 30732 || || || ||||| || ||| || || | ||| | | ||| |||| | |||||||| Sbjct 34384 TCATCCTCTTTTCCGGCTGCT-GTGCGGCGGTTGAACTGCGGCGCCACGATGAAACGCTT 34326 Query 30733 ATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAGGGCAGTACCCATATCCAGCGCTTT 30792 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 34325 ATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAGGGCGGTGCCCATATCCAGCGCTTT 34266 Query 30793 CATCTTTTCAGTATCTACTGGCGCGCTTTTTCGCCACTTATATACTGCCGGGTTTGTAGC 30852 || |||||| || || || ||||| ||| |||| | | |||||| | || Sbjct 34265 CAGCTTTTCGGTGTCGACCGGCGCTGATTTCTGCCATTGCAGCAGGGCCGGGCTCAACGC 34206 Query 30853 TATATCATCGAGCTGGGACTTGCTTACACCTGCCCCAGAATGATAATCCTCGTTAGAAAT 30912 | ||| ||||| ||||| || || || | || || || ||||||||||| || Sbjct 34205 AACCATATCCAGCTGCGACTTACTCACGCCGTCTCCGGAGTGGTAATCCTCGTTGCTGAT 34146 Query 30913 GTCGTAATAAATGCCAGGTTCCAT 30936 |||| | ||||| || || | ||| Sbjct 34145 GTCGAAGTAAATTCCTGGCTTCAT 34122 >seq284 Length=207326 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | ||||| | | ||| Sbjct 36382 CTGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAG 36323 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||||| | ||||| || ||| ||| ||||||| || || || || | ||||||||| Sbjct 36322 CAGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAG 36263 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || ||||| ||||| | | || || || |||||| ||| ||||| |||| ||| Sbjct 36262 GATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCAT 36203 Query 37777 AAAGGCGTCACTGAAATCAT 37796 |||||| || |||||||||| Sbjct 36202 AAAGGCATCGCTGAAATCAT 36183 >seq401 Length=77198 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 37598 TGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAGC 37657 |||| |||||||| ||||| || || || | || |||||| ||| | | |||| Sbjct 62844 TGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGC 62903 Query 37658 AGCGTGCAAACAAGCGACC-GTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||| | |||||||| || ||| || || ||||| || ||||| |||| ||||||||| Sbjct 62904 AGCGGCCCAACAAGCGCCCTGTG-AACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAG 62962 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAG 37773 || || || | || | | || ||||| |||||| ||||||||| | || ||| Sbjct 62963 GACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAG 63019 >seq77 Length=324652 Score = 87.8 bits (96), Expect = 5e-13 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| |||||| | ||||||| | || || |||| ||||||||||| | |||| Sbjct 103294 CTGGCCAAAGAGCTGAACTGCCCGCTGATCGCGCTGTCGCAGTTGAACCGAAGCCTGGAA 103235 Query 37657 CAGCGTGCAAACAAGCG-ACCGTGCAATG-CCGACTTACGTGAGTCGGGCGTAATCGAGC 37714 |||||| | |||||||| ||||| ||| |||| | || || || |||| ||||| | Sbjct 103234 CAGCGTCCCAACAAGCGTCCCGTG--ATGAGCGACCTGCGCGAATCCGGCGCTATCGAAC 103177 Query 37715 AGGAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCC 37763 |||| || || ||||| | | | || ||||||||| |||||||| Sbjct 103176 AGGACGCCGACGTGATCCTGTTCATCTACCGCGACGAGGTCTACAACCC 103128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151152661403334