Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq374 188 2e-42 seq426 163 6e-35 seq1971 152 1e-31 seq1210 152 1e-31 seq396 145 2e-29 seq1077 114 3e-20 >seq374 Length=102525 Score = 188 bits (208), Expect = 2e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || ||||| |||||||||| |||||| | || || ||| Sbjct 857 ACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCG 798 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || ||||| || || |||||||| || ||||||||| Sbjct 797 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGA 738 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||||||||||||||| | || || || || || | |||||| Sbjct 737 ATCTTAGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTT 678 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | |||||| Sbjct 677 CCAGTGAGGGTCTTTACGAAAATTTGCAT 649 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || |||||||| | |||||| | || || ||| Sbjct 629 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCG 570 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || |||||||| || ||||| || || ||||| || Sbjct 569 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGG 510 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||||||||||||||| || || | || || || | |||| ||||| Sbjct 509 ATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTG 450 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| |||||||| | |||||| Sbjct 449 CCAGTGAGAGTCTTTACGAAAATTTGCAT 421 Score = 134 bits (148), Expect = 3e-26 Identities = 133/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || ||||| || || |||| |||||| | ||||| ||| Sbjct 173 ACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCATCCTCG 114 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || || || || ||||| || |||||||| || ||||| || Sbjct 113 AGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 54 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103 || || ||| ||||||||||| ||||| || | ||| ||||| ||||||| Sbjct 53 ATCTTAGTCTTTACGTTCTCAATAGTGTCGGAGCCTTCGACTTCCAGGGTAA 2 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || ||||||||||| | || || | || || || Sbjct 401 ACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCA 342 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || || || || ||||| || || ||||| || ||||| || Sbjct 341 AGTTGCTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 282 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||||||||| ||||| | ||| ||||| || || | ||||| Sbjct 281 ATCTTAGTCTTTACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTTG 222 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 221 CCAGTGAGGGTCTTGACAAAGATTTGCAT 193 >seq426 Length=101737 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || |||||||||||||| | ||| || | ||||| ||| Sbjct 78 ACGAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCG 137 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || || || || ||||| |||||||| || || ||||||||| Sbjct 138 AGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGA 197 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || || || |||| || || |||||||| | ||||| Sbjct 198 ATCTTAGTCTTGACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTG 257 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||| ||||| || | ||||||| Sbjct 258 CCAGTTAGAGTCTTTACAAAGATTTGCATT 287 >seq1971 Length=9940 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || ||||| || | || || | ||||| ||| Sbjct 4807 ACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCG 4748 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || |||||||| || |||||||| || ||||| || Sbjct 4747 AGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 4688 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||| || | ||| || || ||||| | ||||| Sbjct 4687 ATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTG 4628 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | |||||| Sbjct 4627 CCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || || || ||||| |||| |||||| | || || ||| Sbjct 5035 ACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 4976 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || |||||||| || || || || || ||||| || Sbjct 4975 AGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGG 4916 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| || | || || || || || | ||||| Sbjct 4915 ATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTTG 4856 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 4855 CCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || || || ||||| |||| || || | || || || Sbjct 4579 ACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 4520 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 4519 AGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 4460 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| ||||||||||| | || || || ||||| | ||||| Sbjct 4459 ATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTTG 4400 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 4399 CCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || ||||| |||| || || | || || || Sbjct 4123 ACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 4064 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || |||||||| || || || || || ||||| || Sbjct 4063 AGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGG 4004 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||||||||| || || | ||||| |||||||| | ||||| Sbjct 4003 ATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTG 3944 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 3943 CCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || |||||||| | || || | || || || ||||| Sbjct 4346 GTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGCTG 4287 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || |||||||| || || |||||||| ||||| || || || Sbjct 4286 CTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTT 4227 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||||||||| | || || || ||||| | ||||| || || Sbjct 4226 GGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCGAGGGTGATGGTCTTGCCGGT 4167 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 4166 GAGGGTCTTGACGAAGATCTGCAT 4143 >seq1210 Length=15033 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| || | |||||| | || || |||||||| Sbjct 12716 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTG 12775 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || |||||||| || || || || || ||||| || || || Sbjct 12776 CTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 12835 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || |||||||| | || || |||||||| | ||||| ||||| Sbjct 12836 GGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTCTTGCCTGT 12895 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| ||||| || | |||||| Sbjct 12896 GAGAGTCTTTACAAAGATTTGCAT 12919 >seq396 Length=82706 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || ||||||||||| | ||| || | ||||| || Sbjct 78 ACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCA 137 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || || || || ||||| |||||||| || || ||||||||| Sbjct 138 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGA 197 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || || || |||| || || || ||||| | ||||| Sbjct 198 ATCTTAGTCTTGACATTTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTG 257 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || ||||| || | ||||||| Sbjct 258 CCAGTTAGGGTCTTTACAAAGATTTGCATT 287 >seq1077 Length=16265 Score = 114 bits (126), Expect = 3e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | ||| || | || || |||||||| Sbjct 5422 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 5363 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || |||||||| || || || || || ||||| || || || Sbjct 5362 CTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 5303 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||||||||||| || ||||| || | || || || ||||| | ||||| ||| Sbjct 5302 GGCCTTGACGTTCTCGATAGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTCTTACCT 5245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109334799288809