Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1210 107 1e-18 seq426 102 5e-17 seq1971 100 2e-16 seq374 89.7 3e-13 seq396 84.2 1e-11 >seq1210 Length=15033 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||||||||| | || | || || Sbjct 12711 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 12770 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || || ||||| | || | ||||||||||| Sbjct 12771 AGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGG 12830 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || ||||||| || | ||| ||||| || Sbjct 12831 ATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTCTTG 12890 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| |||||||| ||||| Sbjct 12891 CCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq426 Length=101737 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || || || |||||| | || |||| || || || || || || || Sbjct 96 TCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAA 155 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| || |||||||| | || | ||||||||||| |||||| ||||| | Sbjct 156 ATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTGACATTT 215 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||||||| || | ||| ||||| || || || |||||||| ||| Sbjct 216 TCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTCTTTACA 275 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 276 AAGATTTGCAT 286 >seq1971 Length=9940 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| ||||| || ||| | || | || || || || Sbjct 4574 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTG 4515 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || |||||||| || || || |||||||| | || | ||||||||||| ||||| Sbjct 4514 CTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 4455 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | || | || | ||||||| |||| ||| ||||| || || || Sbjct 4454 GGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGT 4395 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || |||||||||||| Sbjct 4394 CAGGGTCTTGACGAAGATCTGCATA 4370 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| || ||||| ||| | || | || || Sbjct 4351 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCA 4292 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || || ||||| | || | || |||||||| Sbjct 4291 AGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 4232 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | |||| || |||| ||| ||||| || Sbjct 4231 ATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCGAGGGTGATGGTCTTG 4172 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| || |||||||||||| Sbjct 4171 CCGGTGAGGGTCTTGACGAAGATCTGCATA 4142 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| || ||||| || ||||| || Sbjct 4789 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 4730 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| ||||| |||||| Sbjct 4729 ATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTC 4670 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | || || |||| ||| ||||| || || || | ||||| || Sbjct 4669 TCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACG 4610 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 4609 AAGATTTGCATA 4598 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| ||||| ||||| | || | || || ||||| Sbjct 5030 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTG 4971 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| || || || || || ||||| | || | ||||||||||| ||||| Sbjct 4970 CTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 4911 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | || | || | ||||||| |||| || ||||| || || || Sbjct 4910 GGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTTGCCAGT 4851 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || ||||||||| Sbjct 4850 CAAGGTCTTGACGAAAATCTGCATA 4826 >seq374 Length=102525 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | || | || || ||||| || |||||||| Sbjct 611 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 552 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGGA 34909 || || || || ||||| | || | ||||||||||| ||||| ||| |||||| Sbjct 551 ATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT-TGTCTTGACGTT 493 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||||||| || | || ||||| || || ||||||||||| || Sbjct 492 CTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTTAC 433 Query 34970 AAAGATCTGCATA 34982 || || |||||| Sbjct 432 GAAAATTTGCATA 420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || ||||| | || | || || ||||| || |||||||| Sbjct 839 TCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 780 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || || || | || | ||||||||||| |||||| |||||| Sbjct 779 ATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTAGTCTTGACGTTC 720 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||||| || | || || || ||||| ||||| ||||| || Sbjct 719 TCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTCTTTACG 660 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 659 AAAATTTGCATA 648 >seq396 Length=82706 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || |||||| | || |||| || || || || || || || Sbjct 96 TCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAA 155 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| ||||| || Sbjct 156 ATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTGAC--AT 213 Query 34911 GCTATCGAT-TCACCGG---CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| ||||||| || | ||| ||||| || || || || ||||| Sbjct 214 --TTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGTTAGGGTCTT 271 Query 34967 CACAAAGATCTGCAT 34981 |||||||| ||||| Sbjct 272 TACAAAGATTTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324592741513656