Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19 226 3e-54 seq714 84.2 2e-11 >seq19 Length=879724 Score = 226 bits (250), Expect = 3e-54 Identities = 654/992 (66%), Gaps = 22/992 (2%) Strand=Plus/Minus Query 18584 TATATTTTAGTTGATTGTTATGTTATGGTTAAAAATCAACATCCAAAGAAAAAG---AA- 18639 |||| |||||| | || || | | | |||||||||| |||||| || || | || Sbjct 584224 TATACTTTAGT-GTTTCTTTGGCTGGGCTTAAAAATCATCATCCAGGGAGAAGGCCGAAG 584166 Query 18640 --TTCTCTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAA 18697 || ||||| |||| ||| || || |||||||||| || | || | ||| |||| Sbjct 584165 CTTTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAA 584106 Query 18698 AGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACA 18756 ||||||| ||||| || | | || || ||| |||||||||||||| ||||| | || Sbjct 584105 AGAAATTGGTTTTGCCTTGCAGGGAGAT-CATCTCCATAAAATCAAACGGATTGGTGGCA 584047 Query 18757 TTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA- 18815 | ||||||||| | | || | ||| || ||| || || ||||| | |||||| Sbjct 584046 TGATATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATAC 583987 Query 18816 TGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAA 18875 |||| ||||| | |||||| || || | ||| || | |||||||||| ||| Sbjct 583986 TGTG-ACATCAGTTTTGCATTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAA 583928 Query 18876 TTCTTGTTCTATATTTACTGCCTCTGATATAA-TAGATACAACTCTATCTTCATTAGGAG 18934 ||| | ||| || | ||| || || |||| | || | || || | || Sbjct 583927 TTCCTTTTCGATTTCTACCGCGTCGCGGATAATTCCATGAACGACTTCCTGGCTCAGTTT 583868 Query 18935 GGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTAC 18994 | | || || |||| | | || || ||||| |||||||| | ||||| ||||| Sbjct 583867 ATTTTTGAGCAT-TTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGG 583809 Query 18995 TTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATA 19054 ||||| |||||| ||| |||| || |||||||| ||||||||||| |||||||| | Sbjct 583808 AAATCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGA 583749 Query 19055 TAGAAGCAAATGATCCAG-AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTT 19113 | ||| || | | ||| | ||||| || ||||| ||||| || ||||| || | | | Sbjct 583748 TCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGT 583690 Query 19114 TCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTT 19173 || || || | | | | |||||| || |||||| || || || || ||| Sbjct 583689 TCGGCAAAATTTCCGCC------CTCAATCCAGCGCAATGCCCATTCTGCTTTTTTCTTT 583636 Query 19174 ACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACA 19233 ||||| || | ||||||| | || || || || || | |||||||| | Sbjct 583635 ACACAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATA 583576 Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 || | ||| |||| | || |||| || || || ||||| || ||||| || Sbjct 583575 TAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAG 583516 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || |||||||| | ||||| | | ||||||||| || || | | | | ||| Sbjct 583515 CCATAAAAACAACGGGCTTCGGGAAGCTGTACTTCGCTCATGAAGTTCACTGCAAGGTTT 583456 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||||| || || || ||||| || |||||||| || | || ||| ||| ||||| Sbjct 583455 TCATTTACAATGCCGTCACTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGC 583396 Query 19414 TCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACT 19473 || ||| |||| | | ||| | || || | ||| | || | ||||||| | Sbjct 583395 TCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCG 583336 Query 19474 GTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGA 19533 ||||| ||| || || || |||||||| | ||| || ||| | |||| ||||| Sbjct 583335 GTCCAGAAACTTGCTTCACTCTTCTTATACATTTCCCAGATTTCAGGGTATTTAATAGGC 583276 Query 19534 AATATAACAAATCTATTTTTATTTTCT-TTAA 19564 || | |||||| | | || |||||| |||| Sbjct 583275 AAAAGAACAAAGCGGTCCTTGTTTTCTCTTAA 583244 Score = 215 bits (238), Expect = 6e-51 Identities = 627/953 (66%), Gaps = 24/953 (3%) Strand=Plus/Minus Query 47886 GATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCAC 47943 || || || ||||||||||| ||||| | ||||| |||||| | ||| ||||| | || Sbjct 585649 GAGGCCAGGTTACATACAGCAACCTCGTCTTTGGA--AGTATACTCTATAATTTCTGTAC 585592 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 | || || || |||||| || || |||||||| || || ||| |||| ||| Sbjct 585591 AAAGGTTGGAACTTTTGATGGTTCCTAAATTTTGCTGGTTGGATTTGC--TGTTTGCTGC 585534 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || || | || | |||| ||||| ||||| ||||| || || | || | ||| Sbjct 585533 ATCTTTATACAACAGATAAGGGGTTCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCA 585474 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTA---GCTTTATTATCATGTTCGTATTTAGTATA 48118 || || | ||||| | | | || || || | |||||| ||| Sbjct 585473 AAGC-TCTTGTGCTTTA--ATGGTTTTACGGGCACGTCCTTCTTTTTCGTAACGCTCATA 585417 Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACAT 48178 ||| || ||||| | ||| | || | | || || ||||| |||||| | Sbjct 585416 TAAAGCATCGAATTCTGCACCAAAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAA 585357 Query 48179 CAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGC 48238 || ||| || | | | || ||| || |||| || | || || |||||| || Sbjct 585356 TAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGC 585297 Query 48239 TATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA---AGTTCAA 48294 ||| |||||||| || | | |||||||| || ||| || |||| || || | Sbjct 585296 -ATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCATGGTT---TTTACGCAGGTCCA 585241 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||| || | ||| ||||||||||| || | || || || | ||||| |||| Sbjct 585240 GAAAACTCAGCACATCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTT 585181 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 || || || || || | ||| | ||| |||| |||| | ||| | ||||| || |||| Sbjct 585180 TACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGGTACAA 585121 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 | ||||| | || || ||||| ||||||| ||| | || | || ||| | Sbjct 585120 TCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGTTATGGA 585061 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 | | ||| ||||||||||| ||| || ||| ||| |||| | ||||| | Sbjct 585060 TGCTTAAACCAATACCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAAGTATCGT 585001 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||||||||| ||||| || || ||| | | || ||| || ||||||||| || | Sbjct 585000 AAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGACATTTGAGGTT 584941 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 | || ||| ||||||||| ||||| | |||||| ||||||| ||| | || Sbjct 584940 TAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCATGCGTAAACCAGCGCTCACTCATCA 584881 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 ||||| ||| |||| || || ||||| || || || |||| | ||||||| Sbjct 584880 GGTTATACGTTGCAATCGCACTTTCAATATCTTCTTTGTGAATCCCTACGGCAACACGCA 584821 Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATT-TATTTTCAAAAGATATGATTTT 48773 | |||| || ||| || | ||| |||| ||||| || |||||||| ||||| |||||| Sbjct 584820 TAAACAAATGTTGCGGGCGTTCTACAA-TTTGTCCTTCTATTTTCAGCAGATAGGATTTT 584762 Query 48774 TCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || | |||||||| |||||||| | | || ||| || | |||| |||||| Sbjct 584761 TCAAGGGTTTTAAACCCAAAATAATCGAATCCAAAATCCCTGTCATAAATAAT 584709 >seq714 Length=69046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 65886 AGATATTGTAGAGTTTTGTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTTGCAGC 65945 |||||||||| ||| ||||| | ||||||||| ||||| | ||||| || || || Sbjct 6340 AGATATTGTACCTTTTAGTGAAGAGTTGGCAAATAGTGGAAAGACGGTGATTGTGGCTGC 6399 Query 65946 ATTGGATGGAACATTTAAAAGAAAACCTTTTGGTAATGTATTAAATTTAATTCCATTATC 66005 ||||||||||| ||| | || || |||||||| | || || | || ||||| | Sbjct 6400 TTTGGATGGAACCTTTCAGAGGAAGCCTTTTGGAACGGTGTTGGAATTGGTTCCAAAGGC 6459 Query 66006 TGAAACAGTAACAAAACTTACAGCTGTGTGTATGAAATGTTTTAAAGATGCATCTTTTTC 66065 || | || ||||| | | || || || |||| ||| | ||| || ||| | || || Sbjct 6460 AGAGTCGGTTACAAAGTTGTCGGCCGTCTGCATGATATGCTATAAGGAGGCACCATTCTC 6519 Query 66066 AAAACGTAT 66074 ||||| || Sbjct 6520 CAAACGAAT 6528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562036238780280