Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-17 seq374 86.0 5e-11 >seq19 Length=879724 Score = 107 bits (118), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 550314 AATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTG 550373 ||| | | ||| || | ||||| | ||| || | |||||||||| |||| ||| | Sbjct 539514 AATATACTCCACAAGAGATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAG 539573 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 ||| | ||||| ||||| || || || || || || || || || ||||| |||||| Sbjct 539574 ACTTTTTAGGTCAGGAAGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACG 539633 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 |||||||||| ||||| ||||| ||||| ||||| || | | ||| | || | Sbjct 539634 CACAACGTCAGGCTACAAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCA 539693 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 | || ||||||||||| || || | || ||||| | |||||| Sbjct 539694 TTAACGAACCTACTGCAGCGGCTTTAGCCTATGGTTTGGATAAA 539737 Score = 104 bits (114), Expect = 2e-16 Identities = 262/395 (66%), Gaps = 24/395 (6%) Strand=Plus/Plus Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 || |||| || || ||||||| |||||| |||||| |||||||| | | | | | Sbjct 540264 AAGGTGTAAACCCTGATGAGGTTGTTGCAATTGGTGCTGCAATTCAGGGTGGTGTATT-- 540321 Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 |||| | |||| || || | || || | | |||||||| || || || Sbjct 540322 ---GACA----GGTGAAG---TAAAAGACGTTTTATTATTGGATGTTACCCCGCTTTCAT 540371 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | ||| | || || | || ||| | ||||| || || || || ||||| ||||||| Sbjct 540372 TAGGTATTGAGACCATGGGTGGTGTGATGACAAAACTGATTGAAGCCAATACAACTATTC 540431 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 ||| ||||||| | || ||||| | | || ||||| || | || ||| | Sbjct 540432 CTTCTAAAAAAGCAGAAACTTTCTCTACTGCTGCTGACAATCAGCCTTCAGTAGAAATCC 540491 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAA---AGATAATAATCA-ACT--TGGTACTT 552495 | ||||| | |||||| | | ||| || | | || | ||| ||| || Sbjct 540492 ATATTTTACAGGGAGAACG------CCCTATGGCAGCTCAAAACCGTACTATTGGACGTT 540545 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 ||| |||||| |||||||| || || |||||||| || || |||||||||||| | || | Sbjct 540546 TTATTTTAGATGGTATTCCACCAGCACCTCGTGGTGTTCCTCAAATTGAAGTTGCATTTG 540605 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||| |||||||| || || || |||| | |||| Sbjct 540606 ATATTGATGCCAACGGTATCCTGCATGTAAGTGCT 540640 >seq374 Length=102525 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| ||||| || || || || || ||| |||||||| | ||||| | Sbjct 867 GAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCG 808 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || || || || || |||||||| || || | || ||||| || ||||| || || Sbjct 807 GCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTC 748 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 || |||||||| || || || |||||| || || | | | || ||||| Sbjct 747 CTTGTCTTGAATCTTAGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGT 688 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| || ||||| || || || ||||||||||||||| Sbjct 687 GATAGTCTTTCCAGTGAGGGTCTTTACGAAAATTTGCATA 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028749861665230