Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq846 201 4e-47 seq406 113 1e-20 seq1338 95.1 4e-15 >seq846 Length=12855 Score = 201 bits (222), Expect = 4e-47 Identities = 262/362 (72%), Gaps = 3/362 (1%) Strand=Plus/Plus Query 39215 AACACCGACTGGGCTTATGGGGTGATTCGATGAAATCTCTTGCAGAGCAGATGCGTAACC 39274 ||||| |||||| ||| |||||| | |||||| | || | |||||| |||| Sbjct 9674 AACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACT 9733 Query 39275 ACGACCGCGAGCAGATGAGCCGCATGGCCCATAACCTGCCAGAGCAGTACCAGGAGCGTG 39334 ||||| ||||||||| | || || ||| | ||| |||| || |||||| | || Sbjct 9734 TTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGC 9793 Query 39335 CGCCGGTCGAACAAGTGGCGCAGGTATTCAACAAGCTGTTCAACGAGCTGCGCGCCGCTT 39394 ||| ||| |||| || |||||| | ||||| |||||| | || | | || ||| Sbjct 9794 CGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTT 9853 Query 39395 TCCCGGCCAGTATGGCAAACTTCCGCACCCAGGATGACCTGAACGAATTCCGCCGTCAGT 39454 ||||||| || |||| ||| || |||| |||| ||||||||| ||||||| |||| Sbjct 9854 TCCCGGCGAGCCTGGCTAAC---CGTGACCAGAATGAACTGAACGAAATCCGCCGCCAGT 9910 Query 39455 GGCTGCTGGCGTTTCAGGAGAACGGGATCCACACCATGGCTCAGGTCGATGCCGGCATGC 39514 || | ||||| || | ||| ||||||||| ||| |||| ||||| | || || |||| Sbjct 9911 GGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGC 9970 Query 39515 GTGTAGCTCGCCGCCAGGAGCGTCCATTCCTGCCGTCTCCGGGCCAGTTCGTCGCCTGGT 39574 | ||||| || || ||| | || ||||||||||| || || || ||||| |||||||||| Sbjct 9971 GCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTTGTCGCCTGGT 10030 Query 39575 GC 39576 || Sbjct 10031 GC 10032 Score = 147 bits (162), Expect = 7e-31 Identities = 148/188 (79%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 42240 TTTGATTTTCTGGAATCAAACCGCCATAATCATGTCATCGGAGCCTGAACAACTCCGGTG 42299 |||||||||| |||||| | |||||| | |||| ||||| ||||| |||||||| Sbjct 12515 TTTGATTTTCAATAATCAACTTGTCATAATTAAGTCACCGGAGTTTGAACTCCTCCGGTG 12574 Query 42300 ACTTCTGCGCATTTAAGGGGACTTAAATGCGACCA--CAATCTGAACTCC--TCACCTTG 42355 |||||||||| | | |||||| | ||||| || ||||| ||||| || || | Sbjct 12575 ACTTCTGCGC-TAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCT- 12632 Query 42356 TCACAGATGCAGAAATGCACCTGCGATTTTCTGCATTCTGCGTTTGACCTCTTCGGAGGT 42415 ||||||||||||||||||||||||||| | ||||| | |||||||| |||| ||||||| Sbjct 12633 TCACAGATGCAGAAATGCACCTGCGATATCTTGCATCCAGCGTTTGATCTCTGCGGAGGT 12692 Query 42416 GAAGCGTG 42423 |||||||| Sbjct 12693 GAAGCGTG 12700 >seq406 Length=38937 Score = 113 bits (124), Expect = 1e-20 Identities = 179/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 46196 AAAAGAACCTGGGCAACCAGGTTGCTGGTGATGGCTGGAAATATCGCGGTCGCGGCCTGA 46255 ||||||| |||| ||| | | | | ||| |||||| || | ||| ||||| || | Sbjct 1030 AAAAGAA--TGGGGAACAACGGTCCGACTGACGGCTGGTTTTACCTCGGGCGCGGGCTTA 973 Query 46256 AGCAAATCACCGGGCTCAGCAATTACCGCAACTGTGGCCACGCGCTGAAGTTGGACCTTG 46315 || ||||||||||| | ||| || ||| |||| ||| | | |||||| |||| || | Sbjct 972 TCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAGGTGGATCTGG 913 Query 46316 TAACCCAGCCTGAATTGCTGGAACAGGATGAATATGCTGCGCGCTCCGCTGCATGGTTCT 46375 | | |||||||| |||||| ||||| ||||| || || ||| ||| || ||||||| Sbjct 912 TTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCGGCGTGGTTCT 853 Query 46376 ATGTCTCGCACGGATGCCTGCTCCATTCCGGCGACGTGGAGCGCGTGACGCTGCTTATCA 46435 | | | || ||| || | |||||||| ||| |||||| |||| | | |||| Sbjct 852 TCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACGCAGATCATCA 793 Query 46436 ACGGCGGCCGTAACGG 46451 | || || | ||||| Sbjct 792 ATGGTGGGCAGAACGG 777 Score = 91.5 bits (100), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 45898 GCGGCAGGTATAAGCGCCGGTCTAGCCGTGCGCTGGTTTCACTATATCGATGCTGCAATG 45957 || || ||||| || | | || ||| |||||||| || ||||| || |||||| Sbjct 1327 GCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATATCACCGCGGCAATG 1268 Query 45958 AAGGAATTCGGCAT--AACCGCGCCGCTCGATCAGGCCATGTTTATCGCGCAGATGGGCC 46015 || || || ||||| ||| | |||| | ||||| ||||||||||||||| | || | Sbjct 1267 AAAGAGTTTGGCATCGAACAAC--CGCTGCACCAGGCGATGTTTATCGCGCAGGTCGGGC 1210 Query 46016 ACGAGTCCGGCGGCTTCACCCGGCTGGTGGAAAACCTGAACTA 46058 | ||||| |||||| ||||||||| ||||||| | ||||| Sbjct 1209 ATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTA 1167 >seq1338 Length=18756 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 12181 GCTGGAATCTCCGTTGGTCAGTACAGCGCAGCAATGCGTACGCTTCCGGCTCAGTTCACG 12240 || || || ||||| || ||||| | || || ||||||| ||| || || |||||||| Sbjct 9835 GCGGGGATTTCCGTCGGGCAGTATAAAGCCGCCATGCGTATGCTGCCTGCACAGTTCACC 9894 Query 12241 GATATCGCCACGCAGTTAGCTGGTGGGCAGTCGCCGTTCCTGATTCTGCTGCAACAGGGC 12300 || | ||||||||| | || || ||||| |||| ||||| |||||||||||||| Sbjct 9895 GACGTGGCCACGCAGCTTGCAGGCGGGCAAAGTCCGTGGCTGATCCTGCTGCAACAGGGT 9954 Query 12301 GGGCAGATTAAAGAC 12315 || ||| |||| ||| Sbjct 9955 GGTCAGGTTAAGGAC 9969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158502160000812