Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq250 156 1e-33 seq1432 104 8e-18 seq5011 96.9 1e-15 >seq250 Length=59172 Score = 156 bits (172), Expect = 1e-33 Identities = 253/355 (71%), Gaps = 13/355 (4%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||| | ||||||||||||| ||| | ||||| |||||||||| Sbjct 46494 ACGGCAAGCTCAGCTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGT 46435 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTT--CGCGGACCAGCTCGGACTGAA 24937 |||| ||||| |||||||| ||||| ||||| | | ||| | ||| ||| ||| Sbjct 46434 TCAACATCGCCAGCTACGCACTGCTCACCCACATGGTGGCGCAGGCCA--CCGGGCTGGG 46377 Query 24938 GGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997 || ||||| ||| | ||| ||||||| || ||||| || |||||||| || || Sbjct 46376 CGTGGGCGACTTCGTGCATACCCTGGGCGACGCGCATCTGTACTCCAACCACGTTGACCA 46317 Query 24998 GGCGACCGAACAACTGTCGCGCACG-CACACGGGCTATCCGTGGCTGGCGCTGAATCACC 25056 |||| ||| || |||||||||||| | | || ||| ||| |||| | |||| | | Sbjct 46316 GGCGCGCGAGCAGCTGTCGCGCACGCCGCGCGCGCT-GCCGCAGCTGTGGTTGAA-CCCG 46259 Query 25057 GCG---ACTCGA--TCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCC 25111 ||| || ||| | |||| | | ||| ||| || || ||||||| || Sbjct 46258 GCGGTCAC-CGACCTGTTCGGCTTCCAGTTCGATGACATCCGCATCGACGGCTACGACCC 46200 Query 25112 GCACCCGGTCATCAAGGCCCCCGTGGCCGTGTAAAGGAGGTACGGCTGTGGCCGA 25166 |||||||| |||||||| || ||||| || | | || | | ||||||| || || Sbjct 46199 GCACCCGGCGATCAAGGCGCCGGTGGCGGTATGACGGCGATCCGGCTGTCGCTGA 46145 >seq1432 Length=12607 Score = 104 bits (114), Expect = 8e-18 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| || ||||| || ||||||||||| ||| | |||||||| ||||||| Sbjct 8820 ACGGCAAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGT 8879 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| |||||| |||||||| | |||| | ||| | || || || Sbjct 8880 TCAACATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGC 8939 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 ||| || ||| ||||||| ||||| ||| |||| | || || |||||||| |||| Sbjct 8940 CCGGAGACTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGG 8999 >seq5011 Length=2423 Score = 96.9 bits (106), Expect = 1e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||||||||| ||||||||||||||||||| ||| || | || ||||||||||||| Sbjct 544 ACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGT 485 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTC---GGACTGA 24936 |||||||||| ||| || |||||||||| || | | || ||| || || ||| Sbjct 484 TCAATATCGCATCCTATGCCCTGCTGACCC---TCATGGTGGCGCAGGTCACGGGTCTGC 428 Query 24937 AGGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGC 24996 || || || ||| | || ||||| | || || ||| | ||||| |||||| Sbjct 427 AGCCGGGTGATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGC 368 Query 24997 AGGCG 25001 ||||| Sbjct 367 AGGCG 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164152666976496