Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq284 174 5e-39 seq77 172 2e-38 seq401 168 2e-37 seq82 132 2e-26 seq2511 118 3e-22 seq1914 113 1e-20 seq590 96.9 1e-15 seq105 96.9 1e-15 seq1719 91.5 5e-14 seq1055 84.2 7e-12 >seq284 Length=207326 Score = 174 bits (192), Expect = 5e-39 Identities = 202/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||||||||||||||||| || || |||||||| |||||||| || || Sbjct 36362 CCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCC 36303 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | || ||| |||| || ||||| |||||||||||||| || || ||||||||||| Sbjct 36302 GATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTT 36243 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 ||| ||||| |||||||| || |||||||| ||| || | ||| | ||||| | || Sbjct 36242 CGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCAT 36183 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 |||| || || || ||||| ||||| |||| || || ||| | ||||| Sbjct 36182 TATCGGTAAACAGCGTAACGG---GCCAATCGGCACCACGCGCCTGGCCTTCATCGGTAA 36126 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGGC 21580 ||| | || |||||| | || || |||||| Sbjct 36125 ATACACCCGCTTCGAGAACCTGGCGCCGGGC 36095 >seq77 Length=324652 Score = 172 bits (190), Expect = 2e-38 Identities = 160/202 (79%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 21314 CCCG-TGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 |||| |||||| |||||||||| | ||||| |||||| ||||| || |||||||| || Sbjct 103274 CCCGCTGATCGCGCTGTCGCAGTTGAACCGAAGCCTGGAACAGCGTCCCAACAAGCGTCC 103215 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||||| ||||||||||| ||||| || ||||| ||||||||||| |||||| |||| Sbjct 103214 CGTGATGAGCGACCTGCGCGAATCCGGCGCTATCGAACAGGACGCCGACGTGATCCTGTT 103155 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 | | |||||||||||||||||| |||| ||| | | | || ||| ||| ||| | || Sbjct 103154 CATCTACCGCGACGAGGTCTACAACCCCGATTCGCCGGACAAGGGCACGGCCGAGATCAT 103095 Query 21493 CATCGCGAAGCACCGCAACGGC 21514 ||||| ||||| || |||||| Sbjct 103094 CATCGGCAAGCAGCGTAACGGC 103073 >seq401 Length=77198 Score = 168 bits (186), Expect = 2e-37 Identities = 195/260 (75%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTG-GAGCAGCGGCCGAACAAGCGAC 21371 |||||| |||| ||| |||||| | |||| | || ||||||||||| |||||||| | Sbjct 62863 CCCCGTCATCGCGCTATCGCAGTTGTCCCGC-CAGTGTGAGCAGCGGCCCAACAAGCGCC 62921 Query 21372 CGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGT 21431 | ||| | ||| |||| |||||||| ||||||||||||||||| || | ||||||| Sbjct 62922 CTGTGAACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGT 62981 Query 21432 TCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGA 21491 |||| || || |||||||||||| ||||||| || ||||| || || || ||||||| Sbjct 62982 TCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAGTACAAGGGGGTTGCCGAGTTGA 63041 Query 21492 TCATCGCGAAGCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTCCTGGGTAAGT 21551 || ||| |||||||| ||||| || | | || || ||| |||||| | || ||| Sbjct 63042 TCCTCGGCAAGCACCGGAACGGTGAAACCGGTACCGTGCGGACCGCGTTTATTGGCAAGG 63101 Query 21552 ACTCGCGATTCGAGCAGCTC 21571 | | || || | || |||| Sbjct 63102 AAACTCGTTTTGTGCCGCTC 63121 >seq82 Length=126987 Score = 132 bits (146), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 21314 CCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCG 21373 || ||||||| |||||| |||||||||||||| ||||| ||| | ||||||| ||| Sbjct 80350 CCGGTGATCGCGCTGTCCCAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCG 80409 Query 21374 ATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTC 21433 ||||| | ||||| ||||| ||||| || |||||||||||||| || ||||| ||||| Sbjct 80410 GTGATGGCCGACCTTCGCGAATCCGGCGCTATCGAGCAGGACGCGGACATGATCGTGTTC 80469 Query 21434 GTGTACCGCGACGAGGTCTACCACCCGGATA---CCCAGTACCGCGGCGTGGCTGAGTTG 21490 | ||||||||||| ||| || ||| | | | || ||| |||| ||| | Sbjct 80470 ATCTACCGCGACGACTATTACAACAAGGAAAACTCGCCCGACAAGGGCCTGGCCGAGATC 80529 Query 21491 ATCATCGCGAAGCACCG 21507 ||||||| |||||||| Sbjct 80530 ATCATCGGCAAGCACCG 80546 >seq2511 Length=13392 Score = 118 bits (130), Expect = 3e-22 Identities = 211/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 24241 CAGCGGTAAGACCCGCAGTTTCGCGAAGATGGCGGCGATCCGAGCCTACATGTTCGCCGA 24300 ||||| ||||| ||| || || |||||| || | || | |||||| | || | Sbjct 1341 CAGCG--AAGACGCGCTCCTTTGCCAAGATGATTGCAGTGCGGGGCTACATCTACGGACA 1398 Query 24301 GGCTGGCATCTCCGGGCAGATTCTCTGCGGCCGGGAGTACATGAACAGCCTGGAAGACTC 24360 ||| || | | || ||| | | ||||||||| ||| ||||||| || || ||||| Sbjct 1399 GGCCGGAGTTACTGGTCAGCTCGTTTGCGGCCGGCAGTTCATGAACTCGCTCGAGGACTC 1458 Query 24361 CTCCATGGAGGAGGTCAAGCAGGCGATCCGGTCCGAACCCTGGCTCAACGCCTACTTCGA 24420 ||| | |||||| ||||| || || || || | ||| | |||| ||| Sbjct 1459 CTCGCTTGAGGAGTGCAAGCGAGCAATTGAAGATGAGCCTTTTCTCGCTGATTACTACGA 1518 Query 24421 GATCGGCGAGAAGTTCATCCGCACCCGCAACCGACGAGTGTGGTTCTCGTTCTCCGGCTT 24480 ||| ||||| |||| |||| | |||| || | || | |||||| ||||| ||||| Sbjct 1519 GATAGGCGATAAGTACATCAAGAGCCGCGACGGTCGGATCTGGTTCACGTTCGTTGGCTT 1578 Query 24481 GCGCCACAACCTCGACAGCATCAAGTCGAAGGCGCGCATCCTCATCGCTTGGGTCGATGA 24540 | | |||| ||| ||||||||||| || | ||||||||||| ||||||||||| Sbjct 1579 GGATCGCAACGTCGCAAGCATCAAGTCAAAAGGTCGCATCCTCATACTGTGGGTCGATGA 1638 Query 24541 GGCCGAG 24547 ||||||| Sbjct 1639 GGCCGAG 1645 >seq1914 Length=11218 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||| || ||||||||||| ||||||| ||||| || ||||| || Sbjct 4722 CCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGACGGCCAAATAAGCGTCC 4781 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | | |||||||| || ||| ||||| || |||||||| || |||| ||||| Sbjct 4782 GATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGACGCGGACCTGATTATGTT 4841 Query 21433 CGTGTACCGCGACGAGGTCTACCACCC 21459 ||| ||||| |||||||| |||||||| Sbjct 4842 CGTCTACCGGGACGAGGTGTACCACCC 4868 >seq590 Length=15478 Score = 96.9 bits (106), Expect = 1e-15 Identities = 282/427 (66%), Gaps = 28/427 (7%) Strand=Plus/Plus Query 21169 CCGGCGTCACAAGCAGCGCCATGGGTTGAGCCTGCTGGTGGTGGACTACCTGCAGCTGCT 21228 ||| || | |||||||||| | || || || || | | | ||||| ||||||||| | Sbjct 2829 CCGTCGACTCAAGCAGCGCGAAGGACTGCGCATGGTCATCATCGACTATCTGCAGCTGAT 2888 Query 21229 GGAGAGCTCCGGCAAG----TCCACTCGCACCG--AGGACGTCAGCGACATGTCCCGCCA 21282 | | ||| |||||| || | |||| | |||| ||| || | ||||| Sbjct 2889 G---ACCTCGGGCAAGCGCGTCGAGTCGCGTCAGCAGGAGGTCTCGGAGTTCTCCCGAAG 2945 Query 21283 GTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCG 21342 |||||| | || | |||||| | || || |||| || ||||| || ||||| Sbjct 2946 CCTCAAGCTCATCGCCAAGGAGCTGCAGGTTCCGGTCATCGCCCTCTCGCAACTGAACCG 3005 Query 21343 C--TCCCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGG 21400 |||| |||||||| | ||||| || ||| |||||||| ||||| || Sbjct 3006 TGGTCCC--GAGCAGCGCACCGACAAGAAGCCCGCGATCAGCGACCTGCGAGAGTCGGGC 3063 Query 21401 GCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCG 21460 ||||||||||||||||||| || |||| | || |||||||| ||| ||| || | Sbjct 3064 TCGATCGAGCAGGACGCCGACATGGTCATCCTGCTGCACCGCGACTCGGTGTACGACAAG 3123 Query 21461 GATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGG------C 21514 || | || ||| |||| ||| || | ||| |||| |||||||| ||||| | Sbjct 3124 GACGTGC-GT-CCG-GGCGAGGCCGACCTCATCGTCGCCAAGCACCGTAACGGACCTACC 3180 Query 21515 GAGCCAAGCACTGTTCGGTGCGCGTTCCTGGGTAAGTACTCGCGATTCGAGCAGCTCGCT 21574 | | | | ||| || |||||||| ||| | |||||||| ||| | | | ||| Sbjct 3181 GCGACGATCACCGT------CGCGTTCCAGGGGCACTACTCGCGCTTCATGGACATGGCT 3234 Query 21575 CCGGGCG 21581 || |||| Sbjct 3235 CCCGGCG 3241 >seq105 Length=265611 Score = 96.9 bits (106), Expect = 1e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 13621 GCTGGTAGATCTCGGAGCGGTGGATGGCGACGTCGTCCGGGGCGGTGATGCCGAGGCGCA 13680 ||||||| ||||| |||||| | ||| ||||| | ||| || ||||| |||| |||| Sbjct 130093 GCTGGTAAATCTCTTCGCGGTGCACGGCCACGTCCTTCGGAGCAGTGATACCGATACGCA 130034 Query 13681 CCTGGTCGCCTTGGCTGCTGAGGACCGTGACGGTGATGTTGTCGCCGATATGCAGGGTTT 13740 |||||| ||| | | || ||| || || ||| ||| ||| ||||| |||||||| Sbjct 130033 CCTGGTTGCCCTTGACGCCGAGCACGGTCACGCTGACCGAGTCACCGATCATCAGGGTTT 129974 Query 13741 CGCCGGGGCGGCGGGTCAAGATCAGCAT 13768 |||| |||||| |||| ||||| ||| Sbjct 129973 CGCCTACGCGGCGAGTCAGGATCAACAT 129946 >seq1719 Length=12511 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 21320 ATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGA-ACAAGCGACCGATGAT 21378 |||| |||||| |||||| ||| |||| ||| || | ||||||| ||| | | Sbjct 5663 ATCGCGCTGTCACAGCTCTCCCGTCAGGTGGAA-AGCCGCGAAGACAAGCGCCCGCAGCT 5721 Query 21379 GTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTA 21438 || |||||||| || |||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 5722 CTCCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTA 5781 Query 21439 CCGCGACGA 21447 |||||||| Sbjct 5782 TCGCGACGA 5790 >seq1055 Length=31167 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 21115 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 21057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157091133060678