Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq61 154 5e-33 seq77 93.3 1e-14 seq1055 84.2 8e-12 seq590 84.2 8e-12 seq401 82.4 3e-11 seq284 80.6 9e-11 >seq61 Length=131009 Score = 154 bits (170), Expect = 5e-33 Identities = 235/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 11627 GTTGGCATTGAGCAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGGC 11686 || ||| | | ||| |||||||| || || || | || ||||| | |||||| | ||| Sbjct 118285 GTGGGCGTCGCGCACGAGAAGCTGGCCGATATTCTGAAAGACGTGCAGGACAAGATTGGC 118344 Query 11687 GACTTCCTCAATACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAAA 11746 |||||| | | || ||||| ||||| | || || || |||||| | || || Sbjct 118345 GACTTCGCCCAGACGGGCGGCGGCGCCATGAAGGACTTTTTTGAGAACATCGCCCCGCGC 118404 Query 11747 GTTGGCGTGACCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCTTGGCTTGTAC 11806 || |||||||| || || ||||||||||| || ||||||| | ||||| ||| ||||| Sbjct 118405 GTGGGCGTGACTGCCGAGCAGTTCCGGAAGCTCGCCGGCCCCGACGCCCTGGGCCTGTAC 118464 Query 11807 GTCTCGAGCCTGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGAGGCT 11866 || ||||||||| ||||| | ||| | || |||||||||| | ||||| Sbjct 118465 TTCAAGAGCCTGGAGCGCGCCAACCTGTCGCAGACCGAGCTGACCTTCTACATGGAGGCA 118524 Query 11867 ATTGCGAGCGATGCGACTGCGCTGCTCCCGCTGCTTCGCAATAACGCTGAAGGATTCAAG 11926 || || |||||| || | ||| |||||||||| | || ||| || |||||| Sbjct 118525 ATCGCCAGCGATTCGGCCAAGCTAATCCCGCTGCTGCAGAACAACAGCATCGGCTTCAAG 118584 Query 11927 ACCTTTGGTGACGCCGCCCAGGCCGCTGGCGCGAT 11961 | || || |||||||||||||| |||||||| Sbjct 118585 CAGTGGGGCGAAGCCGCCCAGGCCGCCGGCGCGAT 118619 >seq77 Length=324652 Score = 93.3 bits (102), Expect = 1e-14 Identities = 142/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 45569 CGCCCCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGAC 45628 || ||| |||||||||| || | |||||||||||||| |||||||| || || || ||| Sbjct 103231 CGTCCCAACAAGCGTCCCGTGATGAGCGACCTGCGCGAATCCGGCGCTATCGAACAGGAC 103172 Query 45629 GCCGACATCGTCATGTTCGTGTACCGCGATGAAGTCTA-TTTCCCGAACAGC--GACAGG 45685 |||||| | || ||||| | |||||||| || ||||| ||||| || ||| Sbjct 103171 GCCGACGTGATCCTGTTCATCTACCGCGACGAGGTCTACAACCCCGATTCGCCGGAC--- 103115 Query 45686 AAGGGTATCGGCGAAATCCTGATCCGGAAGAACCGGGACGGAGAGATCGGCAGCGTATTC 45745 ||||| | | ||| ||| | ||| | ||| | || |||| |||||||| || | | Sbjct 103114 AAGGGCACGGCCGAGATCATCATCGGCAAGCAGCGTAACGGCCCGATCGGCA-CG-GTGC 103057 Query 45746 ACCT--CCTTCCAGGG 45759 ||| |||||||||| Sbjct 103056 GCCTGACCTTCCAGGG 103041 >seq1055 Length=31167 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27080 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27138 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 21115 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 21057 >seq590 Length=15478 Score = 84.2 bits (92), Expect = 8e-12 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 45537 CCCTCTGCCAGCTCAACCGAGGTTGCGAGTCTCGCCCCGACAAGCGTCCGGTCCTCAGCG 45596 |||||| || || ||||| ||| |||| ||| |||||||| || | |||||| Sbjct 2987 CCCTCTCGCAACTGAACCGTGGTCCCGAGCAGCGCACCGACAAGAAGCCCGCGATCAGCG 3046 Query 45597 ACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATGTTCGTGTACCGCG 45656 ||||||| ||||| ||| | || ||||| ||||||||||| ||||| | || |||||| Sbjct 3047 ACCTGCGAGAGTCGGGCTCGATCGAGCAGGACGCCGACATGGTCATCCTGCTGCACCGCG 3106 Query 45657 A 45657 | Sbjct 3107 A 3107 >seq401 Length=77198 Score = 82.4 bits (90), Expect = 3e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 45569 CGCCCCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGAC 45628 || ||| ||||||| || || | ||| |||| ||||||||||| || ||||| ||| Sbjct 62906 CGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGAC 62965 Query 45629 GCCGACATCGTCATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAG 45688 || |||||| |||||||||| || || || || ||||| |||| ||| || ||| Sbjct 62966 GCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAGTACAAG 63025 Query 45689 GGTATCGGCGAAATCCTGATCCGGAAGAACCGGGACGGAGAGATCGGCAGCGT 45741 || | | ||| | | || | ||| ||||| |||| || | ||| | ||| Sbjct 63026 GGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTACCGT 63078 >seq284 Length=207326 Score = 80.6 bits (88), Expect = 9e-11 Identities = 146/214 (68%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45524 TGTCCTGTGCTTCCCCTCTGCCAGCTCAACCGAGGTTGCGAGTCTCGCCCCGACAAGCGT 45583 || || ||| || |||| | |||||||||||| | ||| || || |||| || Sbjct 36364 TGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGC 36305 Query 45584 CCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATG 45643 ||| || | |||| |||| || ||||| || || ||||| || || ||| | ||||| Sbjct 36304 CCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATG 36245 Query 45644 TTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAGGGTATCGGCGAAATC 45703 ||||| ||||| || || || ||| |||| | | ||| || || |||| |||||| Sbjct 36244 TTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATC 36185 Query 45704 CTGATCCGGAAGAACCGGGACGGAGAGATCGGCA 45737 | ||| | || | || |||| ||||||| Sbjct 36184 ATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 36151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172734014489964