Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq54 208 1e-48 seq916 199 7e-46 seq109 104 4e-17 >seq54 Length=176950 Score = 208 bits (230), Expect = 1e-48 Identities = 292/407 (72%), Gaps = 11/407 (3%) Strand=Plus/Plus Query 22950 GCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCA 23009 ||||||| ||| || ||||| |||| || ||| | |||||| || || ||||| Sbjct 118434 GCGGTCGCGGTACGAGGTCTCGCAGACTTCGTCGCTTTCCAGGAACAGCATCTGGGCGCA 118493 Query 23010 ACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAG 23069 ||||| || ||||||||| ||||| || ||||| ||||| || ||||| || | Sbjct 118494 GCCTTCACCGGCGTAGATCTTGGCCGGCAGCGGCGTGGTGTTGGAGAATTCCAGCGTGAC 118553 Query 23070 CGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATA 23129 ||||| |||||| ||||||||||| || ||||| |||||||||||||| ||||| || Sbjct 118554 GTGGCCTTCCCATTCGGGTTCCAGCGGGGTCACGTTGACGATGATGCCGCAGCGCGCGTA 118613 Query 23130 CGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGT 23189 || ||||| |||||||| | ||| ||||||||| ||||| |||| ||| Sbjct 118614 GGTGCTCTTGCCCAGGCAGATGGTCAGGACGCTGCGCGGAATGCGGAAGTATTCCACCGT 118673 Query 23190 GTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCT 23248 | ||||| ||||| ||| ||||||||||| ||| | | | || ||| || Sbjct 118674 GCGGGCCAGCGCGAACGAGTTGGGCGGAATGATGCAGACGTCGCCC--TTGAAA------ 118725 Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308 || ||||| | ||||| ||||||||| |||||||| | | | || | ||||| Sbjct 118726 TC--CACGAACGAGCCTTCGTCGAAATTCTTCGGATCGACGATGGTGGAGTTGATGTTGG 118783 Query 23309 TGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTG 23355 |||| | ||||||||||| |||| || | ||||||||||||||| Sbjct 118784 TGAAGATCTTGAATTCGTCGGCGCAGCGCACGTCGTAGCCGTAGCTG 118830 >seq916 Length=47865 Score = 199 bits (220), Expect = 7e-46 Identities = 295/408 (72%), Gaps = 15/408 (4%) Strand=Plus/Minus Query 22960 TAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCA 23019 ||||| |||||||||||||| || ||||| |||||||| || || || |||||| Sbjct 44056 TAGGACACTTCGCACTCTTCGTCGGATTCGAAGAACAGCATCTGCGCCACGCCTTCGTTG 43997 Query 23020 GCGTAGATCAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTT 23078 |||||||| |||||| | |||| |||| ||||| |||||||| || | || ||| || Sbjct 43996 GCGTAGATTTTTGCCGG-CAAGGTGGTGGTGTTGGAGAACTCCAGGGTGA-CGTGCCCTT 43939 Query 23079 CC-ATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATT 23137 || |||| || ||||||||||| ||||| |||||||||||||| ||||| || || || Sbjct 43938 CCCATTCCGGCTCCAGCGGCGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTGCTTT 43879 Query 23138 TGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCA 23197 |||| ||||||||| | || | |||||| || |||| ||| ||| |||| Sbjct 43878 TGCCCAGGCAGATAGTCAGGACATTACGCGGGATACGGAAGAATTCGACGGTGCGCGCCA 43819 Query 23198 GTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACG 23256 | || || ||| ||||| ||||| ||| | | | | ||| ||| ||| ||| Sbjct 43818 GGGCAAAGGAGTTTGGCGGGATGATGCAGACGTCG--CTCTTG--ACG----TCG--ACG 43769 Query 23257 AAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACC 23316 || | | |||| ||| || || |||||||| || || | ||||||||| ||| Sbjct 43768 AAGCTTTTTTCGTCGAAGTTTTTCGGATCGACGGTTGCCGAGTTGATGTTGGTGAACACC 43709 Query 23317 TTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCG 23364 ||||| || | |||| || | |||||||||||||||||||| ||| Sbjct 43708 TTGAACTCATCGGCGCAGCGTACGTCGTAGCCGTAGCTGGAAACCCCG 43661 >seq109 Length=136801 Score = 104 bits (114), Expect = 4e-17 Identities = 245/369 (66%), Gaps = 11/369 (3%) Strand=Plus/Minus Query 22990 AAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTA 23049 |||||||| || || || |||||| || ||||| | ||||| || ||||| Sbjct 4996 AAGAACAGCATCTGGGCCACGCCTTCGTTGGCATAGATGCGCGCCGGCAGCGGCGTGGTG 4937 Query 23050 TTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACG 23109 || || ||||| || | |||| ||| || || |||||||| || || || ||| Sbjct 4936 TTACTGAATTCCAGGGTCACATGCCCTTCCCACTCCGGCTCCAGCGGGGTCACATTGACG 4877 Query 23110 ATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGA 23169 ||||||||||| ||||| || || ||||| ||||| | || | ||| ||||| Sbjct 4876 ATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACACCACCAGGGTGTCGCGCGGG 4817 Query 23170 ATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCC 23228 ||| ||||| ||| ||| ||||| ||||| ||||| ||||||||||| || | Sbjct 4816 ATGCGGAAGTACTCCACGGTGCGCGCCAGCGCGAAGCTGTTGGGCGGAATGATGCACTCG 4757 Query 23229 TTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGAC 23288 | | || ||| | | ||||| || | | ||| | ||| || ||||| Sbjct 4756 TCGCCC-------ACGATGTCC---ACGAAGCTGCCCGGGTCGAAGTGCTTGGGGTCGAC 4707 Query 23289 AACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCC 23348 | | | || | ||||||||| |||||||| ||| ||| || | || ||||| Sbjct 4706 GATGGTGGAGTTGATGTTGGTGAACACCTTGAACTCGCGCGAGCAGCGCACGTCATAGCC 4647 Query 23349 GTAGCTGGA 23357 ||||||||| Sbjct 4646 GTAGCTGGA 4638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897477731886160