Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq648 167 7e-37 seq2553 163 9e-36 seq461 147 7e-31 seq401 145 2e-30 seq841 132 2e-26 seq1084 118 3e-22 seq35 116 1e-21 >seq648 Length=65085 Score = 167 bits (184), Expect = 7e-37 Identities = 231/321 (72%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 25954 TGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTT 26013 |||||||| || | || |||||| |||||||||||||| |||| | |||||| ||| Sbjct 40358 TGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTT 40299 Query 26014 TCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTAC 26073 ||||||| |||||||| ||| | || || ||||| ||||| |||||||| |||||| Sbjct 40298 TCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTAT 40239 Query 26074 TCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCT 26133 || || |||||||| || |||||||| |||| | || || |||||||| || || Sbjct 40238 TCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCG 40179 Query 26134 TTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCG 26193 ||| | |||||| ||||| ||| |||| ||| |||||| | | | ||||| Sbjct 40178 ACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTC 40119 Query 26194 ACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAGGTTACCGACAAG 26252 || ||| || || |||| ||| || | || ||||| | || || | ||||||| | Sbjct 40118 ACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATG-TACCGACCAA 40060 Query 26253 GATTACTTTATTTACGCCGCG 26273 || ||||| || || || || Sbjct 40059 TATGACTTTGTTAACCCCACG 40039 >seq2553 Length=3545 Score = 163 bits (180), Expect = 9e-36 Identities = 223/311 (72%), Gaps = 9/311 (3%) Strand=Plus/Minus Query 25981 ATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTC---CCACTTGCGGGTTTTCAGTTGC 26037 ||||| || ||||| || |||||||| || || || ||| ||||| |||| || | Sbjct 2570 ATTTCTGTCGTGTACCGTTCAACGCCTTCTTTATCTGTCCATTTGCGTGTTTGCAAACGG 2511 Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 || || || |||||| ||||||||| |||| |||| || || || || || | |||| Sbjct 2510 CCTTCGATATAAACCGATGAACCTTTTTTCAAATACTGACCAGCTATTTCTGCCAACTTG 2451 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCG 26157 | | | | | || |||||||||||| || | ||| ||| | |||||| | | || || Sbjct 2450 CGATAGAACGTGATGCGATGCCATTCAGTGATTTCCTTCCTCTCGCCGCTGTTTTTGTCT 2391 Query 26158 TTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAA 26217 ||||| ||| | ||||| ||| | |||||||| ||||| ||||||| |||||||| Sbjct 2390 TTCCACGATTCGGTAGTCGCAACGCTGATGTTGGCCACTGCTTCGCCATTCGGCATGTAG 2331 Query 26218 CGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTGAT 26277 || | || ||||| | || ||||| ||||| | ||||| || || || |||| Sbjct 2330 CGAGTTTCAGGATCTTGTCCGAGGTTGCCGACGATAATTACCTTGTTGAC------TGAT 2277 Query 26278 GCCATTATTTA 26288 ||||| ||||| Sbjct 2276 GCCATGATTTA 2266 >seq461 Length=6970 Score = 147 bits (162), Expect = 7e-31 Identities = 228/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||||||| ||| || | |||| Sbjct 2400 CATCTGCATGGTGCCCGTGGTCTTAACAAGAATTTCAGTGACGTAACGGGTGATACCGTT 2341 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| ||||||||||| ||||| ||||| | || || ||| Sbjct 2340 ATCTTCCCAGCTACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAG 2281 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || || || || | ||||| | |||||| |||||||| ||||| |||||||| ||| Sbjct 2280 ATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTG 2221 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||||||||||| || || || | ||| Sbjct 2220 CTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCACCTGCAGGTT 2161 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || ||||| ||||| Sbjct 2160 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCCCAGACGCCCGAC 2101 Query 26250 AAGGATTACTTTATTTACGCCGCGTG 26275 ||||| || || || | || |||| Sbjct 2100 GAGGATGACCTTGTTGATACCACGTG 2075 >seq401 Length=77198 Score = 145 bits (160), Expect = 2e-30 Identities = 215/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| || || || ||||||||||| | || ||||| |||||||||| |||||| Sbjct 66342 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCCCACTCGCGGGTGCG 66401 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || || || | ||| ||| ||||| ||| ||||| |||||||| || || Sbjct 66402 GAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATACTCACCCGCGATTTCGGC 66461 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTG 26150 | |||||| || | ||| ||||| ||||| || || || | || | ||||||||| Sbjct 66462 GATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTG 66521 Query 26151 CTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGG 26210 |||||| ||||||||||| ||| || | ||| ||||| | || ||| ||| || || Sbjct 66522 CTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGG 66581 Query 26211 CATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 |||| |||| || || ||| || ||| ||||| || || ||||| || ||||| Sbjct 66582 GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTGACGCC 66641 Query 26271 GCGTG 26275 |||| Sbjct 66642 TCGTG 66646 >seq841 Length=45872 Score = 132 bits (146), Expect = 2e-26 Identities = 231/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||| ||| ||| || | |||| Sbjct 39568 CATCTGCATGGTGCCTGTGGTCTTAACAAGAATTTCGGTGACGTAACGGGTGATACCGTT 39627 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| || || || || ||||| ||||| | || || ||| Sbjct 39628 ATCTTCCCAGCTACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAG 39687 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || ||||| || | ||||| | |||||| |||||||| |||||||||||||||||| Sbjct 39688 ATATTCGCCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTG 39747 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||| |||| || || || || | ||| Sbjct 39748 CTCCCGCATCTCCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTT 39807 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || |||||| || || Sbjct 39808 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCCCAGGCGTCCTAC 39867 Query 26250 AAGGATTACTTTATTTACGCCGCGTGATGCCATTAT 26285 || || || || || | ||| || |||||| || Sbjct 39868 GAGAATGACCTTGTTAATGCCACGAACTGCCATGAT 39903 >seq1084 Length=8902 Score = 118 bits (130), Expect = 3e-22 Identities = 215/309 (70%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| | |||||| |||||||| || | | ||||| |||||||||| || |||| Sbjct 8547 GTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTTCCCACTCTCGTGTTTG 8488 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || | || || ||||| ||||| || |||||| ||| ||||| || ||||| || || Sbjct 8487 AAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGC 8428 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTC---TTTCTTTTCGCCGGT 26147 || || ||||||| || || |||||||| ||| ||| ||||| | || || Sbjct 8427 GACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGT---CCCGT 8371 Query 26148 CTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCA 26205 ||||| || |||| ||| || || || | | | | |||| ||||| || Sbjct 8370 TTGCTTGTCAGTCCACTGCTCACTT--GTTGCAAGGCTGAGATTGGTTACTGCATTACCG 8313 Query 26206 TTAGGCATGTAACGGATCTCTGGATCGTTCCC-CAGGTTACCGACAAGGATTACTTTATT 26264 || || | ||| || | |||||||| | || ||||| || || | ||| |||||||| Sbjct 8312 TTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTG-CCAACCAAGATCACTTTATT 8254 Query 26265 TACGCCGCG 26273 ||||||||| Sbjct 8253 TACGCCGCG 8245 >seq35 Length=166930 Score = 116 bits (128), Expect = 1e-21 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 25978 ACAATTTCAGTGGTGTAGCGCTCAACGCCG---TCCTTTTC---CCACTTGCGGGTTTTC 26031 || ||||| ||| ||||||| || ||||| ||||| || |||||||||||| ||| Sbjct 115767 ACGATTTCGGTGCTGTAGCGATCGGCGCCGGTATCCTTGTCTTGCCACTTGCGGGTCTTC 115826 Query 26032 AGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCT 26091 || | || || ||||| ||| || ||||||||||| ||||| ||||| || || Sbjct 115827 AGACGGCCTTCGATGTAGACCGAGCGGCCCTTCTTCAGGTATTCGCCGGCGATTTCGGCC 115886 Query 26092 ACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGC 26151 | | | ||| |||||||| |||||||| || |||| ||| |||||| | | Sbjct 115887 AGGCGGTTATACATGACGACGCGGTGCCATTCGGTTTCTTCGCGCTTCTCGCCGCTGGCC 115946 Query 26152 TTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGC 26211 || || |||||| | ||| || | || |||||| || |||| | || | || Sbjct 115947 TTGTCCTTCCAGGACGAGGTGGTGGCGATGGACATGTTGCAGATTGCGGCCCCGTCGGGG 116006 Query 26212 ATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTAC 26267 |||| |||| || || ||| |||||||| || || || || ||||| || || Sbjct 116007 CTGTAGCGGACTTCCGGGTCGCGACCCAGGTTGCCCACGAGAATGACTTTGTTAAC 116062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159798001068282