Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_018274.1 Length=36847 Score E Sequences producing significant alignments: (Bits) Value seq757 248 2e-61 seq447 84.2 5e-12 >seq757 Length=83746 Score = 248 bits (274), Expect = 2e-61 Identities = 272/362 (75%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 1401 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGT 1460 || || || || || | ||||||||| ||| || ||||| | | ||||| || || Sbjct 49947 AAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGG 50006 Query 1461 GAGTGCAACTACGCCGCCCAAATCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGAC 1520 | ||||| | ||||| || |||| |||||| ||||||| |||||||| | || ||| Sbjct 50007 AATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGAT 50066 Query 1521 CTTGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAG 1580 || ||||||||||| | | || |||||||| ||| |||| |||||||||||||||||| Sbjct 50067 CTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAG 50126 Query 1581 AACATGCTCGACGCCTGGTCGAGCCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGC 1640 ||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| | Sbjct 50127 CACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGA 50186 Query 1641 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTG 1700 ||| | || || || || || || || || | | ||| |||||||||| | Sbjct 50187 GCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAA 50246 Query 1701 CGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTTCTCGCCGAGTTGGGCCGTCTTGAG 1760 ||||| ||||||||||||||||| ||||||||||| ||| ||| | || ||||| | | Sbjct 50247 CGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCG 50306 Query 1761 CG 1762 || Sbjct 50307 CG 50308 Score = 131 bits (144), Expect = 4e-26 Identities = 122/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 9351 CATTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 9410 |||| ||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| Sbjct 56939 CATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 56997 Query 9411 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCG 9468 ||||||||||||||||||||| ||||| ||| | |||| ||| | ||||||||| Sbjct 56998 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 57055 Query 9469 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 9500 | || || |||| || ||||| ||||||| Sbjct 57056 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 57087 Score = 127 bits (140), Expect = 5e-25 Identities = 221/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9747 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTG 9806 || ||||||||||||||| | || || |||| || || ||||| || || ||| || Sbjct 57316 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57375 Query 9807 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9866 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 57376 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57435 Query 9867 CTGGTCGAACTCCAGCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGG 9920 |||| ||| | ||| |||||||| ||||||| | || ||| ||||| Sbjct 57436 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57492 Query 9921 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 9980 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57493 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57552 Query 9981 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 10040 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 57553 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57612 Query 10041 GAGCGGGTCGAGTGGCTGGAC 10061 ||||| || || ||||| ||| Sbjct 57613 GAGCGAGTGGAATGGCTAGAC 57633 Score = 123 bits (136), Expect = 6e-24 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||||||| || | || || || |||||||| || ||| || | Sbjct 48700 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48759 Query 237 GGGACGATCATTTCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAAG 296 ||||| | ||| ||| ||||||||||| ||||||||||| | ||||||||||| Sbjct 48760 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 48819 Query 297 CGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCG 356 | | || || | || |||||||||||||||||||| || | |||||| || ||| | Sbjct 48820 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTCT 48879 Query 357 TCTTGGACCGTTGACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGCAGAGGC 416 | | | || | |||| || | | ||| ||||| ||||||| || || | Sbjct 48880 CCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCCC 48939 Query 417 TCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCCTTTTTT 476 ||||| || || ||| | | ||||| || || | | | | ||||| || | || Sbjct 48940 TCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTTG 48999 Query 477 CGCAGGCTGTACCGAGTGAATGCAAGATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAA 536 || || |||| ||||| ||||| | || || || || || ||| |||||| Sbjct 49000 CGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGGCG 49059 Query 537 CCATGCCCTGCGCTCACCTGGCCGTCATAGAGGGGTATGTATACATACTCGCCCTC 592 || || || || || ||| |||| || | || | ||| | |||| | |||| Sbjct 49060 CCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCCTC 49115 Score = 86.0 bits (94), Expect = 1e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 6882 GCCTGGGGCGAGCGTCCGCCTGTCTTCGTCCAGCTGCTGGCCGCCGAGGTGGCCCGCAGC 6941 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 53781 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53840 Query 6942 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 7001 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 53841 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53900 Query 7002 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 7061 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53901 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53960 Query 7062 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTG 7111 | || ||||| || ||| ||| |||| | || ||| ||| | |||| Sbjct 53961 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 54010 >seq447 Length=48793 Score = 84.2 bits (92), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11438 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACG--CAACAA 11495 |||| ||||| | |||||| ||| ||||||||||||| | || | || |||| | Sbjct 37186 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 37242 Query 11496 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATAC 11555 ||||| ||||| || | ||||| | ||| || || ||||| || ||||| Sbjct 37243 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 37302 Query 11556 CGCACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11612 | | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 37303 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 37359 Query 11613 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11672 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 37360 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 37419 Query 11673 C 11673 | Sbjct 37420 C 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117774355191366