Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq4950 686 0.0 seq846 105 2e-18 seq406 91.5 4e-14 >seq4950 Length=777 Score = 686 bits (760), Expect = 0.0 Identities = 416/440 (95%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 37347 CATCTGTGTTAATCACTGGACCGAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC 37406 |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 777 CATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC 718 Query 37407 CATACAAAGATATTGTTGGTGTATGGACTGTATGCCACGGACACACCGGAAAAGACATCA 37466 |||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||| Sbjct 717 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 658 Query 37467 TGCTCGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 37526 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 657 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 598 Query 37527 CGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGCGCGGCG 37586 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 597 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 538 Query 37587 CTCTTTACTCGTTCGTCTATAACGTGGGCACAGGCAATTTCAGAACATCGACGCTTCTTC 37646 |||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||| Sbjct 537 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 478 Query 37647 GCAAAATAAACCAGGGCGATATCAAGGGCGCATGTGATCAGCTACGGCGCTGGACATACG 37706 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | Sbjct 477 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 418 Query 37707 CTGGCGGTAAGCAATGGAAAGGGCTGATGACCCGTCGTGAGATTGAGCGTGAAGTCTGTT 37766 |||||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||| Sbjct 417 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 358 Query 37767 TGTGGGGGCAACAATGAGCA 37786 ||||||| || |||||| || Sbjct 357 TGTGGGGTCAGCAATGAACA 338 Score = 176 bits (194), Expect = 1e-39 Identities = 195/261 (75%), Gaps = 23/261 (9%) Strand=Plus/Minus Query 37882 TAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 37941 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 334 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 275 Query 37942 ATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAA---GCCACA---- 37994 |||||||||||||||||||||| ||||||||| |||||||| ||| |||| | Sbjct 274 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 215 Query 37995 --------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGACGTAGCAAAAC 38040 | |||| |||||||||||| ||| || ||||| || || || Sbjct 214 TGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCAC 155 Query 38041 TCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGAAAGTCTCCGT 38099 | || | | ||| || |||||| | ||| |||| || || || || || ||| ||| Sbjct 154 TGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGT 96 Query 38100 GCTGATGTTTCTGCTGGTCGT 38120 | || |||| | ||||||||| Sbjct 95 GATGGTGTTGCCGCTGGTCGT 75 >seq846 Length=12855 Score = 105 bits (116), Expect = 2e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 22060 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTGCGAG 22119 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1691 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 1750 Query 22120 GATTGTTATTCAGTGCCGATATTTACCTTT 22149 || || | |||| ||| | ||| || ||| Sbjct 1751 GA-TGCTGTTCATTGCTGCTATACACTTTT 1779 Score = 105 bits (116), Expect = 2e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 30569 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 30628 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 8830 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 8889 Query 30629 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 30688 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 8890 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 8949 Query 30689 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 30748 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 8950 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 9009 Query 30749 CACTGGCATGGCACCAACCAAATGTTCTACCGCCAAAAACG 30789 || || || || | ||| |||||| | || |||| || Sbjct 9010 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 9050 >seq406 Length=38937 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 24939 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGTGGTTGGCTGCGGCGATA 24998 ||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 29334 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGCTGCGGCGATA 29393 Query 24999 AAT 25001 || Sbjct 29394 TAT 29396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127168403028630