Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq50 170 7e-38 seq201 107 7e-19 >seq50 Length=107299 Score = 170 bits (188), Expect = 7e-38 Identities = 325/470 (69%), Gaps = 34/470 (7%) Strand=Plus/Minus Query 20619 TAGACCTGCGTGACGGCCATGCGGTACAGCGCCGGCCAGGTCTCGGGGTGCGGCTTGCCG 20678 || ||||||| ||||||| |||||||| | |||||||||| || || |||||||| Sbjct 1118 TACACCTGCGCGACGGCCTGACGGTACAGGTCAGGCCAGGTCTGCGGATGGGGCTTGCCC 1059 Query 20679 GGCCGCCATACGCGCTGATACAGCGCCCACGAGCCAGCCTCGTCACCGCGCGACGGCAGC 20738 |||||||| |||| | ||||||||||| | | || | || ||| || ||||||| Sbjct 1058 GGCCGCCAGGTGCGCAGGTACAGCGCCCAGCTGGCGTCCGCATCGCCGACCGGCGGCAGC 999 Query 20739 GCCTTCGGATCGGTCCACAACAGCAGGCGGGCGCACGCGGCGGCCAGTACGTCGTCCTCG 20798 ||||||||||| ||||||| |||||| || || | |||| ||||| |||||||| | Sbjct 998 GCCTTCGGATCTGTCCACAGCAGCAGCCGCGCCACCCCGGCCGCCAGCACGTCGTCGTAT 939 Query 20799 GCCAGTGCCTTGTAGATCGCCGGTCGCGAGAACAGG--ACGTTGCGCTTCTCGCACACGG 20856 | || || |||||||| ||| | |||| ||| |||| || ||||| | Sbjct 938 TCGAGCGCGGCATAGATCGC--GTCCGGGTCGCAGGCAACGCTGCGAGCCTTGCACAACG 881 Query 20857 CATTGGTCAGGTGCGCGACGCTCGGATGGGT-CATGATC---CCCTTCACACCGCCGCCG 20912 | | |||||| | ||| || | || || || | ||| ||||||||||| | Sbjct 880 C---CGCCAGGTGACCCTTGCT-GGCCGCGTGCAGGAACACACCCCACACACCGCCGCGG 825 Query 20913 C---------------TCTCGAACTGCCAGAAGCCCCGCGCCGGGCCGCCGCCTTCCTGC 20957 | |||||||||||||||| || |||||||| |||||| || || Sbjct 824 CTGGCCCGAGTGCCCTTCTCGAACTGCCAGAATCCGCGCGCCGGCCCGCCG--ATCTGGC 767 Query 20958 AAACGCGTG-CGGAACCGGCTTTCCTGCAAGCCGATCGCCAGCAGCATCACGCGGGCCTG 21016 | ||| |||| ||||||||||||| ||||| |||||||| || ||||| | | | Sbjct 766 --GCCGGTGAAGGAAGCGGCTTTCCTGCAGGCCGACGGCCAGCAGAATGACGCGCG-CGG 710 Query 21017 CGGGC-TGTCAAAGCGGCTCGGCAACAGCCGCAGCGCGGGATCGATGGCG 21065 | ||| |||| | | | ||||| || | |||||| || | ||| ||| Sbjct 709 CAGGCGTGTCCATTCCGGCCGGCAGCACCTCCAGCGCCGGGTTGATTGCG 660 >seq201 Length=34019 Score = 107 bits (118), Expect = 7e-19 Identities = 235/341 (69%), Gaps = 17/341 (5%) Strand=Plus/Minus Query 20670 GGCTTGCCGGGCCGCCATACGCGCTGATACAGCGCCCA---CGAGCCAGCCTCGTCACCG 20726 ||||||||||||||||| |||| | ||||||||||| |||| | || ||| | | Sbjct 2476 GGCTTGCCGGGCCGCCAGGTGCGCAGGTACAGCGCCCAGGCCGAGTCGGCGTCGCCGATG 2417 Query 20727 CGCGACGGCAGCGCCTTCGGATCGGTCCACAACAGCAGGCGGGCGCACGCGGCGGCCAGT 20786 |||| | | ||| || || | ||||| || |||||| || |||| || ||||| Sbjct 2416 CGCGGCAGACTGGCC---GGGTCCGACCACAGCAACAGGCGCGCAAACGCCGCCGCCAGC 2360 Query 20787 ACGTCGTCCTCGGCCAGTGCCTTGTAGATCGCCGGTCGCGAGAAC-AGGACGTTGCGCTT 20845 |||||||||| | |||| | ||| | || ||| |||| | | || ||| Sbjct 2359 ACGTCGTCCTGGTCCAGCCGCGCGTACACCGACGG-CGCGGTCGCGACCACCCCGCGGGC 2301 Query 20846 CTCGCACAC--GGCATTGGTCAGGTGCGCG-ACGCTCGGATGGGTCATGATCCCCTTCAC 20902 | ||| || ||| ||| || | | | || |||||| |||| | ||| ||| Sbjct 2300 CAGGCAGACCTGGC--TGGCGGCGTCCCGGCAAGC-CGGATGCGTCAACACCCCGCGCAC 2244 Query 20903 ACCGCCGCCGCTCTCGAACTGCCAGAAGCCCCGCGCCGGGCCGCCGCCTTCCTGCAAACG 20962 |||||||| |||||||||||||||||| ||||||||||||||| || || | Sbjct 2243 GCCGCCGCCCTGCTCGAACTGCCAGAAGCCGCGCGCCGGGCCGCCG--ATCTGGCGCCGG 2186 Query 20963 CGTGCGGAACCGGCTTTCCTGCAAGCCGATCGCCAGCAGCA 21003 || ||| ||||||||||||| |||||| |||| |||| Sbjct 2185 TGT-ATGAAGCGGCTTTCCTGCAGGCCGATGGCCAAGAGCA 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185663628696498