Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq35 221 5e-53 seq401 156 2e-33 seq172 125 3e-24 seq461 105 3e-18 seq841 84.2 9e-12 >seq35 Length=166930 Score = 221 bits (244), Expect = 5e-53 Identities = 258/343 (75%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 9960 CGACATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAAC 10019 || ||||||||| || ||||||||||| ||||| ||||| || || |||||||||| Sbjct 116075 CGGCATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGT 116016 Query 10020 CCGCTACCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCG--C 10077 ||||||| ||| ||| | |||||||| |||||| | |||| || ||| ||| | Sbjct 116015 CCGCTACAGCCCCGACGGGGCCGCAATCTGCAACATGTCCATCGCCACCACC--TCGTCC 115958 Query 10078 TACAAGGACAAGGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTC 10137 | ||||||||||| |||||||||| | ||| |||||||||||||||||| | | Sbjct 115957 TGGAAGGACAAGGCCAGCGGCGAGAAGCGCGAAGAAACCGAATGGCACCGCGTCGTCATG 115898 Query 10138 TTCGGCCGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGC-CGGTCTACAT 10196 | |||||| ||||| |||| || ||| |||||| |||||| ||| |||||||||| Sbjct 115897 TATAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGC-CGCTCGGTCTACAT 115839 Query 10197 CGAGGGCCGCATCCGCACGCGGAAGTGGCAGGATAACG---CCGGCCAGGATCGCTACAC 10253 ||| ||||| | || || |||||||| || || | ||||| |||||||||| Sbjct 115838 CGAAGGCCGTCTGAAGACCCGCAAGTGGCAAGACAAGGATACCGGCGCCGATCGCTACAG 115779 Query 10254 GACCGAGATCGTCGCCGAGAAGATGCAGATGCTCGGCGACCGC 10296 ||||| |||||||| || ||||||||||||| || | |||| Sbjct 115778 CACCGAAATCGTCGCTGACCAGATGCAGATGCTGGGTGGCCGC 115736 >seq401 Length=77198 Score = 156 bits (172), Expect = 2e-33 Identities = 217/301 (72%), Gaps = 5/301 (2%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 |||||||||||| || ||||||||||| ||||| |||||||||| ||||||| ||| Sbjct 66639 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 66580 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 || |||| |||| | | ||||| ||| || || | ||| ||| || || ||| Sbjct 66579 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 66520 Query 10092 GAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGC 10151 || |||| || | |||| ||||| ||||||||||| ||||||||| |||| Sbjct 66519 GACCGGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGC 66460 Query 10152 CGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGT-CTACATCGAGGGCCGCATCC 10210 ||| |||| | ||||| ||||| || || | ||| || |||| |||| ||| ||| Sbjct 66459 CGAAATCGCGGGTGAGTATCTGCGAAAAGG-GAGCCAGTGCTACGTCGAAGGCACTCTCC 66401 Query 10211 GCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCG 10270 |||| || |||| ||| || | ||| | | |||||||| ||||||||||||| || Sbjct 66400 GCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCGTCG 66344 Query 10271 A 10271 | Sbjct 66343 A 66343 >seq172 Length=24343 Score = 125 bits (138), Expect = 3e-24 Identities = 230/334 (69%), Gaps = 25/334 (7%) Strand=Plus/Minus Query 9974 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 10033 |||| ||||||||||| |||||||| |||||| ||||||||| ||| || Sbjct 1578 TCAATAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTACACCCAAG 1519 Query 10034 GCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCG-CTACAAGGACAAGGCG 10092 ||||| || ||| || |||| |||| || || ||| | || | ||||||||||| Sbjct 1518 GCGGCATGGCGATCACCCGCATCAGCCTGGCCACCACC-AGCGTCCGCAAGGACAAGGAT 1460 Query 10093 AGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCC 10152 || | || |||| ||||||||||||||||| ||||||||| |||| Sbjct 1459 GGCAACCAGC---AGGAGCGTACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGT 1403 Query 10153 GAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCG- 10211 || |||| || ||| ||||||||||||||| |||||||| |||| ||| || | || Sbjct 1402 GAAATCGCCGGCGAATACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCTGCGT 1343 Query 10212 CACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGC---------TACACGACCGAGAT 10262 ||| |||| || |||||||||| || ||| | ||||| || Sbjct 1342 TACG-ACAAGT---------ACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACAT 1293 Query 10263 CGTCGCCGAGAAGATGCAGATGCTCGGCGACCGC 10296 | ||||||| | ||||||||||| |||| |||| Sbjct 1292 CATCGCCGACGAAATGCAGATGCTGGGCGGCCGC 1259 >seq461 Length=6970 Score = 105 bits (116), Expect = 3e-18 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 9974 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 10033 ||||||| |||||||||||||| ||| ||| || |||||| ||| ||| |||| | Sbjct 2084 TCAACAAGGTCATCCTCGTCGGGCGTCTGGGCAATGATCCGGAAGTCCGTTACATCCCCA 2143 Query 10034 GCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGA 10093 ||| | |||| | | ||| | | | || || | || ||| ||||| || Sbjct 2144 ACGGGGGCGCAGTGGCAAACCTGCAGGTGGCCACATCAGAAAGCTGGCGTGACAAACAGA 2203 Query 10094 GCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCG 10153 || |||||| ||| ||| |||||||||||||| | |||||| ||||| | Sbjct 2204 CGGGGGAGATGCGGGAGCAGACGGAATGGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGG 2263 Query 10154 AGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCA 10213 | | | | || || |||||||||||||||| ||||||||||||||| | |||| | Sbjct 2264 AAGTGGCTGGTGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAGGGGCAACTCCGTA 2323 Query 10214 CGCGGAAGTGGCAGGATAACG 10234 | || | ||| | ||||||| Sbjct 2324 CCCGTAGCTGGGAAGATAACG 2344 >seq841 Length=45872 Score = 84.2 bits (92), Expect = 9e-12 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 9976 AACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGAGC 10035 ||||| ||||| ||||| || || || || |||||| ||| ||| |||| | | Sbjct 39882 AACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCGGAAGTCCGTTACATCCCCAAC 39823 Query 10036 GGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGAGC 10095 || | |||| | | ||| | | |||| ||| | || || ||||| || Sbjct 39822 GGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAAACCTGGCGTGACAAACAGACA 39763 Query 10096 GGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCGAG 10155 || |||||| ||| ||| |||||||| ||||| | |||||| ||||| || Sbjct 39762 GGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTGCTGTTCGGCAAGCTCGCGGAA 39703 Query 10156 ATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCACG 10215 | | | ||| || |||||||||||||||| |||||||||||| || | | ||||| Sbjct 39702 GTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAAGGTCAGCTTCGCACC 39643 Query 10216 CGGAAGTGGCAGGATAACG 10234 || | ||| | ||||||| Sbjct 39642 CGTAGCTGGGAAGATAACG 39624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197764544541366