Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq83 147 6e-31 seq40 140 8e-29 seq447 107 5e-19 seq7734 93.3 1e-14 >seq83 Length=313169 Score = 147 bits (162), Expect = 6e-31 Identities = 241/346 (70%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 33540 GGGCGTGTCATTCGCGTTCCTGCGAACTATGACCCCGACACCCGCAGCTATACCGGCACC 33599 ||||| |||| ||||| || ||||||||||| || || || |||| ||||||| Sbjct 6332 GGGCGCATCATCCGCGTGCCGAGCAACTATGACCCGGAGACTCGGGTGTATATCGGCACC 6273 Query 33600 TGGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTACGACCTG 33659 ||||| |||||||| || ||||||||| ||||| || ||||||||||||| ||||||| Sbjct 6272 TGGGACGGCACGTTCAAGACGGCGTGGACCGATAATCCTGCCTGGGTGTTTTTCGACCTG 6213 Query 33660 GTGATCACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCCGATAACGTGGACAAATGG 33719 ||| | || |||| ||| || ||||| ||| | |||| ||||||| ||| Sbjct 6212 GTGGGGAACGACCGCTACGGCCTGGGCGAGCGGGTTCCGGCCGGCTGGCTGGACAAGTGG 6153 Query 33720 GCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGAC 33779 | || |||||| | | || |||||||| | ||| ||||| ||| || | Sbjct 6152 GGCCTGTACCAGATCGGGCGCTACTGCGACGAACCGGT---GGACG---ATGGCTTCGGC 6099 Query 33780 GGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAGCCGGGCCGACGCATTCACG 33839 || || ||||| || | || ||||| |||||| |||||| |||||||| | | Sbjct 6098 GGAAAGGAGCCGCGGTTTACCTGCAATGTCTACCTGCAGACGACTGCCGACGCGTACCGC 6039 Query 33840 GTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTACTGGG 33885 || | | || | ||| || | || || |||||| | ||||||| Sbjct 6038 GTCGTTCAGGATCTGGCGTCCGTGTTTCGAGGCATGGCGTACTGGG 5993 >seq40 Length=145790 Score = 140 bits (154), Expect = 8e-29 Identities = 456/695 (66%), Gaps = 20/695 (3%) Strand=Plus/Minus Query 33198 AACGGCGACATGGTGGGCTACACGC-TGGAATACGTGGTTGAAATGCAGGTTGACGGCGG 33256 ||||||||||| ||||| ||| | |||||| || | || || | ||||||| Sbjct 97925 AACGGCGACATCAACGGCTAT-CGCGTTGAATACCTGATCGAGGTGAACACCGACGGCGC 97867 Query 33257 GAGCTGGCAGCAGGTGCTGAAAACGGCGGTATCCGGCAAAACCAC-CAGCGGCTACGAGC 33315 ||| ||| ||||||| || ||| | |||||| ||||| ||||| ||| | Sbjct 97866 CGGCTACCAGGTGGTGCTGTCCACCGCGTTCGACGGCAAGACCACGCAGCG-CTATACCC 97808 Query 33316 GGAGCCACCGCATTGATTTACCGGCCG---GTAAAACGTGGAACCTTCGCCTGCGCAGGC 33372 | |||||||| || | ||| || | | |||||| | ||| ||||| | Sbjct 97807 GCTCGCACCGCATCGACCTGCCGCGCGCACGCCAGGGCTGGAACATCCGCGTGCGCCGCA 97748 Query 33373 TCACCCCGAACGCGAACAGCG-CACGCATCGGCGACACCATGATGCTGGAAAGCTACACC 33431 |||| || ||||| |||||| ||| ||| |||| || | || |||| | ||| Sbjct 97747 TCACGCCCAACGCCAACAGCAACAC-CATTTCCGACCGCACGGTGGTGGATACGGTGACC 97689 Query 33432 ACCATTATTGACGCGAAGCTGCGCTATCCGAACACCGCCTTACTCTACATGGAATTTGAT 33491 || || || || |||||||| ||||||| | ||| | | ||| | | ||| Sbjct 97688 GAGATCATCGATGCCAAGCTGCGTTATCCGATGTCGGCCGTGGTGGGCATCAAGATCGAT 97629 Query 33492 TCGAGCCAGTTTAACGGCTCTATTCCGCAAATCTCCTGCGAGCCGCGCGGGCGTGTCATT 33551 || ||||| | || |||||| | ||| | | ||| || || |||| Sbjct 97628 GCGTCGCAGTTCCAGAGC---ATTCCGACCCGCGCCTACCACGTGCGTGGCCGCATCATC 97572 Query 33552 CGCGTTCCTGCGAACTATGACCCCGACACCCGCAGCTATACCGGCACCTGGGATGGCACG 33611 || || || | ||||| || | ||| |||||||| |||| ||||| || || Sbjct 97571 CGGGTGCCATCCAACTACCACACGGACCTGCGCAGCTACGACGGCGTATGGGACGGTACC 97512 Query 33612 TTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGATCACTGAT 33671 || || ||| ||||| | ||||||||||||||||| ||||||||| | | || |||| Sbjct 97511 TTCAAGCTGGCCTGGACCAACAACCCGGCCTGGGTGTTCTACGACCTGATCAGCAATGAT 97452 Query 33672 CGCTTCGGACTCGGCGACCGGCTGGACGCCGATAACGTGGACAAATGGGCGCTCTACCAG 33731 |||| || || ||| ||| || ||||| ||||||| |||| || |||||| Sbjct 97451 CGCTATGGCCTGGGCACCCGCGTGCCCGCCGGCTGGCTGGACAAGTGGGGCCTGTACCAG 97392 Query 33732 GTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACGGCAAAGAGCCA 33791 | | | || ||||| ||||||| |||| | ||| | |||||| || || Sbjct 97391 ATTGGCCGCTATTGCGACGAGATGGT---CGACGAC---GGCTTTGGCGGCAAGGAACCG 97338 Query 33792 CGCTATATGTGCAACGTCTACGTGCAG-AGCCGGGCCGACGCATTCACGGTTTTGCGCGA 33850 |||| | ||||||||||| ||||| || | ||| || || | | || ||| || Sbjct 97337 CGCTTCACCTGCAACGTCTATCTGCAGCAGGC-GGCGGATGCCTACCGCGTGGTGCAGGA 97279 Query 33851 CTTTGCGGCCATCTTCCGGGGCATGACTTACTGGG 33885 ||||||| | ||||| || |||||| | ||||||| Sbjct 97278 CTTTGCGTCGATCTTTCGTGGCATGGCGTACTGGG 97244 >seq447 Length=48793 Score = 107 bits (118), Expect = 5e-19 Identities = 300/452 (66%), Gaps = 9/452 (2%) Strand=Plus/Plus Query 31311 AACCCCGTTGACGATCCGGCGCTGGACGTCTGCAACGGTACGCTGACGGCCTGCAAGCTG 31370 |||||| ||||| ||||| |||||| ||||| || ||| | |||||||| | Sbjct 27469 AACCCCACGGACGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTA 27528 Query 31371 CGATTTGGCGAGGCGCAGCCGCTCGACTTCGGCGGATTCCCCGGCACCAGTCTGAT---C 31427 || || |||||| | ||| ||||||||||||||||| | ||||| | Sbjct 27529 CGCTTCGGCGAGTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCC 27588 Query 31428 AGGAGCTAAACATGGACGAAACAC-TGATTCAGGAGATTAAGCGGCACGCGGC-GCAAAC 31485 |||||| | |||| | || ||| | ||| || ||| || ||| ||||| || | Sbjct 27589 CGGAGCTGACCATGCGC-AAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAG 27647 Query 31486 CTACCCGCAGGAGTGCTGCGGGCTTGTCATT-CTGCAGGACGGCCAGCCGCGTTATCTCC 31544 || ||| | |||||||||||||| | | ||| ||| ||| | || | || ||| Sbjct 27648 -TATCCGAAAGAGTGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGC-GCAGAAGTACTTCC 27705 Query 31545 CCTGCAGAAACACCGCAGACAACCCGGCGGCGCATTTTCGCATCGCGCCGGAGGATTACG 31604 | ||| | |||| ||| | ||| | | ||||| | | || ||||| |||| Sbjct 27706 CGTGCCGGAACATCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACG 27765 Query 31605 CCCGCGCCGAAGATCAGGGCGACGTGGTAGGCATCGTTCACAGCCACCCTGACGCCACCA 31664 | || || || | |||||| ||| | || || |||||| ||||| |||||||||| Sbjct 27766 CTGCAGCGGAGGACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCA 27825 Query 31665 GCCAGCCGAGCGAGCTGGATAAGGCGCAGTGCGACGTTACAGAGCTGCCCTGGCATATCC 31724 ||| |||| || || ||| |||||| | || | |||||||||| || | Sbjct 27826 GCCGGCCGTCACCGCACGACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTC 27885 Query 31725 TGAGCTGGCCCGAGGGCGATTTACGCACCATC 31756 || ||||||||||| ||||| || || ||| Sbjct 27886 TGTCGTGGCCCGAGGGGGATTTGCGGACGATC 27917 Score = 91.5 bits (100), Expect = 4e-14 Identities = 228/344 (66%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 33582 CGCAGCTATACCGGCACCTGGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCC 33641 |||||||| | ||| ||||||||||| || || ||| ||||| || ||||| | | Sbjct 31812 CGCAGCTACTCTGGCGTTTGGGATGGCACATTCAAGGAGGCATGGACCGACAACCCTGTC 31871 Query 33642 TGGGTGTTTTACGACCTGGTGATCACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCC 33701 ||| || | ||| | | || |||||||| |||||| || | | ||| Sbjct 31872 TGGCATACCTATGGCCTAACCACAAACGACCGCTTCGGCCTCGGCCGTCGCATCAA-GCC 31930 Query 33702 GATAACG-TGGACAAATGGGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCC 33760 | | | | ||||| |||| ||| |||| | |||| |||||||||||||||||||| Sbjct 31931 GTGGATGGTCGACAAGTGGGAGCTGTACCGCATTTCGCAGTACTGCGATCAGATGGTGCC 31990 Query 33761 GGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAG 33820 | |||| | ||| ||| | || || || | || ||| | | || ||||||| Sbjct 31991 GAACGGGAAGGG------TGGCCAGGAACCGCGTTTCATCTGCGATCTGAACTTGCAGAG 32044 Query 33821 CCGGGCCGACGCATTCACGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTA 33880 | ||| || |||| || | |||||||| | || | || | ||| |||||||| || Sbjct 32045 CAAGGCGGATGCATGGTCGCTGCTGCGCGACATCTCGACGATTTACCGAGGCATGACCTA 32104 Query 33881 CTGGGGTGGCGATCAGCTCGTTACGCTGGCAGACATGCCGCGCG 33924 |||| | || || | || ||| | || |||||||||| Sbjct 32105 TTGGGCCCAGGGCCAAGTCTTCACCCTGTCGGATATGCCGCGCG 32148 >seq7734 Length=384 Score = 93.3 bits (102), Expect = 1e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 11474 GCCTGTCACGACGAAATCGACCGGCGCACGCGGTTAACCGAAGCAGAGTATGCGCATACG 11533 ||||| ||||||||||||||||| |||||| || || || | ||||| | Sbjct 11 GCCTGCCACGACGAAATCGACCGCTGCACGCATTTTGTTGACGCTGGATATGCAAAAGAA 70 Query 11534 TGCGCACTGGAAGGAATGGCGAGAACGCTGATTATCTGGCTGAAAATGGGGCTGATTAA 11592 ||||| |||||||| ||||||||||||| | |||||||||||||| |||| | ||||| Sbjct 71 TGCGCGCTGGAAGGTATGGCGAGAACGCAGGTTATCTGGCTGAAAGAGGGGGTAATTAA 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127779528075264