Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq846 682 0.0 seq406 360 7e-95 seq4719 127 8e-25 >seq846 Length=12855 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 9755 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 9814 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3700 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 3759 Query 9815 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 9874 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 3760 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 3819 Query 9875 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 9934 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 3820 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 3879 Query 9935 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 9994 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 3880 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 3939 Query 9995 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10054 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 3940 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 3999 Query 10055 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10114 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 4000 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 4059 Query 10115 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10174 || || | ||| | || | || | | |||| || || ||||| | ||| || | Sbjct 4060 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 4119 Query 10175 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10234 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 4120 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 4179 Query 10235 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10294 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 4180 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 4239 Query 10295 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10354 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 4240 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 4299 Query 10355 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 10413 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 4300 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 4358 Query 10414 TAATTTCTGGTGTCATG 10430 |||| || ||||||||| Sbjct 4359 TAATGTCCGGTGTCATG 4375 >seq406 Length=38937 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 2994 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3053 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 37201 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 37142 Query 3054 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3113 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 37141 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 37082 Query 3114 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3172 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 37081 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 37023 Query 3173 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3232 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 37022 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 36963 Query 3233 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3292 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 36962 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 36906 Query 3293 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3352 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 36905 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 36846 Query 3353 CACCACATAGACAACAGGCAATTATCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3412 |||||||||| || |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 36845 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 36786 Query 3413 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3472 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 36785 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 36726 Query 3473 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3516 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 36725 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 36682 >seq4719 Length=950 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 31225 TGCGCCGTATCGTCGCCGTATTCCCGCATTAACAGAGACTGCAGCC--ACC-----TTA- 31276 ||||| ||||||||||||||||||||||||||| ||| | |||| || || Sbjct 320 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 261 Query 31277 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 31335 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 260 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 202 Query 31336 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 31394 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 201 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194715318523344