Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq374 109 4e-19 seq1210 87.8 1e-12 seq426 84.2 2e-11 >seq374 Length=102525 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||| || ||| | || |||| || | |||| Sbjct 851 TGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGC 792 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| || || ||||||||||| | ||||| |||||||||||| |||||| Sbjct 791 TTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTA 732 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || |||| ||||||| || || || ||||| || Sbjct 731 GTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTG 672 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| ||||| ||||| Sbjct 671 AGGGTCTTTACGAAAATTTGCAT 649 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||||||||| ||| | || |||| || | |||| Sbjct 623 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGC 564 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| || || |||||||| || | ||||| ||||||||||| |||||| Sbjct 563 TTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTT 504 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || |||| ||||||| ||||| || || || || Sbjct 503 GTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGTG 444 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||| ||||| ||||| ||||| Sbjct 443 AGAGTCTTTACGAAAATTTGCAT 421 >seq1210 Length=15033 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || ||||| || || ||| | || Sbjct 12702 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 12761 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| |||||||| || | ||| | |||||| Sbjct 12762 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCC 12821 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || |||| ||||| | || Sbjct 12822 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTG 12881 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| |||||||| || ||||| Sbjct 12882 ATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq426 Length=101737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||||||||||||||| || | || | || || | ||| Sbjct 84 TGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTGC 143 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||| || || | |||| ||||||||||| |||||| Sbjct 144 TTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTA 203 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || |||| ||||| | || || || || || || Sbjct 204 GTCTTGACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGTT 263 Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769 | ||| |||||||| || ||||| || Sbjct 264 AGAGTCTTTACAAAGATTTGCATTGT 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380889655074621