Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq3870 136 5e-27 seq5011 91.5 2e-13 >seq3870 Length=345 Score = 136 bits (150), Expect = 5e-27 Identities = 215/300 (72%), Gaps = 16/300 (5%) Strand=Plus/Plus Query 153772 CGACGCGTTTCAGTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAAC 153831 ||| || || ||||| || |||||||||||||||||||| || || |||||||| || Sbjct 11 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 70 Query 153832 CCCGTTTGTTACAATTACGTTCGGTACTGGTCAATCCCGATGTGAA---CGCATGATCCA 153888 |||||||| || || || ||| |||| || || | || ||| ||| |||| || Sbjct 71 GCCGTTTGTAACCTTTGGTTTTGGT-CTGGGCA--CCAGCTGGGAATCGCGCCTGATTCA 127 Query 153889 GAAAGCGATTCTGAAAAACCGTATTCGC-GGCCTGGGTAAAGAGGGTATCACTCCGGTAT 153947 | || |||| ||| ||||||| |||| ||||| |||||| | ||| ||| |||| | Sbjct 128 GGAATCGATCCTGCGTAACCGTA-TCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGT 186 Query 153948 TCCCGAAACTGGT-TATG---TTCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGC 154003 ||||||||||||| | || ||| | | || | |||| | | || |||| Sbjct 187 TCCCGAAACTGGTGTTTGCGATTCGCG----ATGGTCTGAACCATAAAAAAGGCGATCCG 242 Query 154004 AACTATGACATCAAACAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATC 154063 ||||| ||||||||||| || || ||||| || || || |||||||| || |||||| Sbjct 243 AACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATC 302 >seq5011 Length=2423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 39629 TCGCGGGATC--ATCGTTTCCGCATGGAACCCTGTTGATC-TGGATGATATGGCTCTGCG 39685 |||||| || ||||||||||||||||| || | | || | ||||| ||||| |||| Sbjct 638 TCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGC-GCTCGTCGATGAAATGGCGCTGCC 580 Query 39686 TCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTA 39745 || || ||||| | ||||||||| ||| | |||| || || || ||| || Sbjct 579 GCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCCTGCCAGCTCTA 520 Query 39746 TCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCT 39805 ||||| || | ||| |||| | || |||||||||||||||| ||||| || || || Sbjct 519 CCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCT 460 Query 39806 GAC 39808 ||| Sbjct 459 GAC 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570016008558760