Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1738 107 4e-18 seq252 107 4e-18 seq291 105 2e-17 seq132 89.7 1e-12 >seq1738 Length=468 Score = 107 bits (118), Expect = 4e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324512 TATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCG 324571 |||||||| ||||||||| |||||||||| |||||||||||| || |||||||||||||| Sbjct 318 TATGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCG 377 Query 324572 AACCCGTTTAGCTCCAC 324588 | ||||||| ||||||| Sbjct 378 ATCCCGTTTGGCTCCAC 394 >seq252 Length=177545 Score = 107 bits (118), Expect = 4e-18 Identities = 288/436 (66%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 150359 ATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTT 150418 || ||||| || ||||| | ||||||||| ||| | ||| |||| ||||| || || Sbjct 34067 ATCCAGATCCTGTCTCGCAGAACCAAAAACAATCCTATTTTAATTGGGGAACCCGGAGTA 34008 Query 150419 GGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC--AG 150476 ||||||||| || | || ||| | || | ||| ||| || ||||| || || Sbjct 34007 GGTAAAACAGCTATTGCCGAGGGAATTGCTTTCAGGATCATTAAAGGCGATGTACCGGAG 33948 Query 150477 ATTCTATGAAAGATGTTGAAATTCTTTCTT---TGAATATGGGTGCATTTACTGCTGGTA 150533 | ||| | |||| | ||| | ||| || || | |||||||| | | ||| ||| Sbjct 33947 AATCT-TAAAAG----TAAAACTGTTTATTCCCTGGACATGGGTGCTCTCATTGCGGGTG 33893 Query 150534 CTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAAC 150593 | || || |||||||| || ||| | || | | | ||||| | | || Sbjct 33892 CGAAATACAAAGGTGAATTTGAGGAAAGATTAAAAGCCGTCGTTAAAGAAGTCAGCCAAA 33833 Query 150594 GCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGA 150650 |||||| || ||||| |||| || ||||| || ||||| || | |||||||||| Sbjct 33832 GCGATGGAGATATTATTTTGTTTATTGATGAGATTCATACCCTTGTTGGTGCTGGTGGC- 33774 Query 150651 CTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAA 150710 || | ||| | ||||| ||||| ||||||||||| || | | || ||| Sbjct 33773 --GGTGAAGGTGCAATGGATGCCGCAAATATTTTAAAACCTGCACTGGCCAGAGGAGAAC 33716 Query 150711 TTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAG 150770 | | | || || || ||||| |||||||||| ||| | ||||||||||| || Sbjct 33715 TGAGGGCTATTGGGGCGACAACACTGGATGAATATCAGAAATATCTTGAAAAAGATAAAG 33656 Query 150771 CACTACAGCGTCGTTT 150786 | || |||||||||| Sbjct 33655 CCCTGGAGCGTCGTTT 33640 >seq291 Length=3003 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 ||| ||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||| Sbjct 296 ATACGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTC 355 Query 324571 GAACCCGTTTAGCTCCAC 324588 || ||||||| ||||||| Sbjct 356 GATCCCGTTTGGCTCCAC 373 >seq132 Length=9364 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 4632 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 4573 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 4572 CCGTTTAGCTCCACCAA 4556 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 4913 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 4854 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 4853 CCGTTTAGCTCCACCAA 4837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147438556934846