Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq4719 697 0.0 seq846 682 0.0 seq406 363 6e-96 seq4950 237 6e-58 >seq4719 Length=950 Score = 697 bits (772), Expect = 0.0 Identities = 455/498 (91%), Gaps = 6/498 (1%) Strand=Plus/Minus Query 30206 CCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCAC 30265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 CCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCAC 885 Query 30266 TATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTG 30325 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 884 TATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGCTG 825 Query 30326 CCCATATCGATGGGCAACTCATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGA 30385 ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 824 CCCATGTCGATGGGCAACTCATGCAATTATTATGAG-AATACACCCGCGCTTCCAGCGGA 766 Query 30386 GTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCT 30445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 GTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCT 706 Query 30446 GTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGC 30505 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| Sbjct 705 GTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCTGCATCAACAGTTTTCTCCTGT 646 Query 30506 CCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGT 30565 |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 645 CCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGTTACTGCTGTCGGT 586 Query 30566 TTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTA 30625 |||||| |||||||||||||||||||||||||||||||||||||| ||||| || | | Sbjct 585 TTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCATTGCCAGAGCGGCA 526 Query 30626 GCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-TTTTTGAAGTTCGCAGAATCGT 30684 | | | |||||||||||| | |||| | ||| || || || |||||||| | Sbjct 525 GAAAACAACATTTTTTTCATCTTATTATCC----TGCATTGTTAAAAACGGCAGAATCCT 470 Query 30685 ATGTGTAGAAAATTAAAC 30702 ||||| | |||||||| Sbjct 469 ATGTGACAACAATTAAAC 452 Score = 138 bits (152), Expect = 4e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 30758 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 30817 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 323 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 265 Query 30818 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 30876 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 264 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 206 Query 30877 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 30936 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 205 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 149 Query 30937 CGG 30939 ||| Sbjct 148 CGG 146 >seq846 Length=12855 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3700 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 3759 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 3760 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 3819 Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 3820 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 3879 Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 3880 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 3939 Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10555 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 3940 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 3999 Query 10556 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10615 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 4000 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 4059 Query 10616 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10675 || || | ||| | || | || | | |||| || || ||||| | ||| || | Sbjct 4060 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 4119 Query 10676 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10735 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 4120 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 4179 Query 10736 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10795 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 4180 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 4239 Query 10796 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10855 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 4240 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 4299 Query 10856 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 10914 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 4300 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 4358 Query 10915 TAATTTCTGGTGTCATG 10931 |||| || ||||||||| Sbjct 4359 TAATGTCCGGTGTCATG 4375 >seq406 Length=38937 Score = 363 bits (402), Expect = 6e-96 Identities = 397/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 2962 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3021 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 37201 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 37142 Query 3022 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3081 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 37141 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 37082 Query 3082 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3140 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 37081 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 37023 Query 3141 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3200 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 37022 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 36963 Query 3201 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3260 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 36962 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 36906 Query 3261 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3320 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 36905 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 36846 Query 3321 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3380 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 36845 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 36786 Query 3381 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3440 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 36785 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 36726 Query 3441 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3484 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 36725 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 36682 >seq4950 Length=777 Score = 237 bits (262), Expect = 6e-58 Identities = 225/284 (79%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 29919 GGGCTG--AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAG 29976 |||||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 283 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 224 Query 29977 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 30036 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 223 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 164 Query 30037 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 30096 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 163 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 104 Query 30097 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 30156 |||| || | || |||||||||||| || | ||| ||||| || |||| ||| Sbjct 103 CTCTGCGTGATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT-CAG 45 Query 30157 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCA 30200 | ||||||||||||||| | || || |||||||||||||| Sbjct 44 --TCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193528264113390