Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq44 309 6e-79 seq1288 205 2e-47 >seq44 Length=77107 Score = 309 bits (342), Expect = 6e-79 Identities = 837/1257 (67%), Gaps = 38/1257 (3%) Strand=Plus/Minus Query 213168 GAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAG 213227 ||||| ||| |||| | || ||| |||||| || || || |||| | ||||| Sbjct 10384 GAGGAATAGTGGCCGTCGCGCTCGGCAAGCTCGGCAGAGGCAGTGAGAGCAGAGAAGTAG 10325 Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATC 213287 || || ||| |||||| ||||||| || | | || ||| |||| | Sbjct 10324 ATAGTCTCAGCGATCTCCTTGTTGAGAACAGCAGCACCAGCAGAGTCGAAAGGCAGACGC 10265 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 ||| ||| || || || || ||||||| ||||| |||||||| | ||| | ||| Sbjct 10264 ATGGCAATGAAGACGTCGGCAAGACCCTGGATACCGATACCGATGGGACGGTGACGAAGG 10205 Query 213348 TTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT 213406 ||||| || | || ||| ||| ||||| |||||| |||||| ||||||||||| || Sbjct 10204 TTAGAGGTGCGTGC-CTCTACCACTGGGTAGTAGTTGCGGTCGATAATCTTGTTGAGATT 10146 Query 213407 GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAA-----CACGTAGCCC 213461 || ||| | ||||| | | ||| || ||| | || || | | || Sbjct 10145 ACGAGTGATGATCTTGGTCAACTCAAAGAGGGCCTGGTGGTCAAAGGTGGCAGGCATGCC 10086 Query 213462 CCG--TCCTGC--ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 | | ||| ||||||| |||| |||||| ||| |||||||| ||||| || || Sbjct 10085 AGGGGTGGTGCGCACAAACTTTGGCAAGGCGATAGAGGCGAGGTTGCACACGGCGACTTC 10026 Query 213518 CT---GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCC 213574 | ||||| ||||||| | ||||||||||| ||||||||||| |||||| || Sbjct 10025 ATCGGGAGAG---GTGTACTGAACAATCTCGGTGCAAAGGTTGCTGCAAGAGATGGTTCC 9969 Query 213575 CAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCC 213634 |||||||| ||||| ||||| |||| || ||||||||||| |||||||||| || Sbjct 9968 GAGGTTCTGCTGGTTGGACTTGCTGTTGCAAGCGTCCTTGTAGAGGATGTAGGGGGTACC 9909 Query 213635 GGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCC 213693 |||||| | ||| ||| | | || | |||||| | |||| ||||| || || | Sbjct 9908 GGTCTCGATCTGTGACTCGATGATAGCGAACCAGAGAT-CCTGAGCCTTTACGGTGCGAC 9850 Query 213694 TGACAG-CTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG 213752 || || || || || ||||| |||| |||||||||| ||| || | |||||| Sbjct 9849 -GAGAGAGGCCAGGTGTCGCCTCATACTTGGTGTAGAGCTCGCGGAACTCATCTCCCCAG 9791 Query 213753 ACCCTGTCCAGTCCCGG-ACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATCTC 213810 | | | || || || | || |||||| | ||| |||||||| | | |||| Sbjct 9790 CACTCGGCGAGGCCAGGTGCCTCAT-TGGGACAGAAGAGACTCCAGTCAGAGTTGGTCTC 9732 Query 213811 TGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCC 213870 ||| | || ||||||||| || | |||||| |||||| ||| ||||| | || | | Sbjct 9731 -GACACGCTCCATGAACAGATCAGAGACCCAGAGCGCGTAGAAGAGGTCGCGGGCACGCA 9673 Query 213871 TCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 |||| ||| || ||| ||||| ||||| || || ||||||| ||| |||||||| | Sbjct 9672 TCTCCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAACTCAAAGACGTCGGCGTGCCATG 9613 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCAC-CAGCCTG 213986 |||| | ||||| ||||||||| ||| | ||| ||| |||||||| || ||| | Sbjct 9612 GCTCGAGGTAGACGGCAAAGGCACCCTTGCGCTTTCCGCCACCCTGGTCGACGTAGC--G 9555 Query 213987 GCCACCAT-GTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCC 214045 | || | ||||||| ||| || | ||||| || ||||| || |||||||| || Sbjct 9554 GGCAGTGTCATTGAAGACGCGAAGCATTGGTACGAGTCCGTTCGAGGTGCCGTTGGTACC 9495 Query 214046 CGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTA 214105 || || |||| | ||| | | ||| |||| || || | |||||||| | Sbjct 9494 GCGGATGTAGGAGCGGCTGGCACGGATCTTGTGGATGGCGATACCGAGACCACCGGCAGA 9435 Query 214106 CTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGT 214165 ||| ||||| | |||||| || | | ||||| ||| ||| | |||||||| || | Sbjct 9434 CTTTGAGATGAGGGCGCACTGCTTAAGTGTCTCGTAGATACCGTCGATGCTGTCCTCCTT 9375 Query 214166 GAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGT 214225 | | | | |||||| || | |||||| ||| | || |||||||| || || Sbjct 9374 CATCTGGACGAGGAAGCAAGAGGACATCTGGGGTGTGGGGGTACCCGAGTTGAAGAGGGT 9315 Query 214226 GGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGG 214285 || |||| || | | | || ||||| | |||||| || | | | | | Sbjct 9314 TGGCGTGGCGTGCGTAAAGAGACGCTTCGAGAGCTGGTGGTAGGTTTCGACGGCGGCGTC 9255 Query 214286 GATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTAT 214345 ||||| | |||||| |||| | | ||| ||||| || ||||| | ||| || Sbjct 9254 AATGTCATCGCCGTGGATACCGAGAGAGACACGCATGAGCATCTGTTGGGGACGCTCGAT 9195 Query 214346 G-GGTC--CTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAA 214399 | || | ||| || | |||||||| |||||| ||||||||||| || || Sbjct 9194 GATCTCGTCGTTGATGC---GGTGCAGGTAGCTGCGCTCGAGAGTCTTGAAGCCGAA 9141 >seq1288 Length=22276 Score = 205 bits (226), Expect = 2e-47 Identities = 560/847 (66%), Gaps = 28/847 (3%) Strand=Plus/Minus Query 47861 TCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGT 47920 || |||||||||||||| | || | ||||| ||||||| | ||| ||||||| Sbjct 943 TCGAAGAAGTTTGTCTTGCGCTGGAGAGAGATCATCTCCATCCACTCGAACGGGTTGGCG 884 Query 47921 GTGTTATACACCC-GTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGAT 47979 | ||| || | | | | || || | ||||||| | || ||| | ||||||| Sbjct 883 GCGTTGTAGATCTTGCGGTAG-CCGAGGGCGACCAGCAGACGGTCGGCGCAGAACTCGAT 825 Query 47980 GTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAG 48039 ||| | | |||| | | |||||||||| || ||| ||||||| |||| |||| Sbjct 824 GTACTGGGCCATGTAGCGGCTGTTCATGCCGATCAGGTCGACGGGCAGCGCCTCGGTGAT 765 Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||||||| ||||| || | | ||| || | | || | | | Sbjct 764 GAACTCCTTCTCGCAGGCGACGGCGTCGCGGATGATCGACTCGATGGTGGGCGC----GT 709 Query 48100 TTTGTTGCGCA--GGTG--CTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTT 48155 | ||| |||| ||| | ||||||| ||||||||||| | ||| | ||| | Sbjct 708 CCAGACGCGAGACGGTGAGCTTCGAGTAGAGCAGACAGGCAAAGTCGCAGTGGAGGCCCT 649 Query 48156 CGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGA 48215 |||| |||||||| ||| |||| |||||| ||| || |||||| || | || |||| Sbjct 648 CGTCGCGGCTGATCAGCTCGTTCGAGAAGGTGAGGCCGTGCATGAGGCCGCGCTTCTTGA 589 Query 48216 GCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGG 48275 ||||||| || | ||| ||||| ||||||||||||||||| || || || |||||| Sbjct 588 GCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGA 529 Query 48276 TGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCT 48335 ||| | ||| | |||| ||| | || | ||||||| | |||||| || |||| Sbjct 528 CGAGGCGCTCGGC-AAAGCTGCG--CGAGTTTTCGATCCAGCGGATCGCCCACTCGGCCT 472 Query 48336 TCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT---TCTTGCACTCACCTG 48392 |||| | | || |||||||| ||||| |||||||| ||||| | | | Sbjct 471 TCTTGCGCACGGCGGGGATCGTCTCGATGGCGTTGAAGAGCTGGGCCTTGCGC---GCGG 415 Query 48393 CGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAG 48452 |||| | ||||| || |||| |||| |||| ||||| | || || || | Sbjct 414 TGTCCTTGATGTAGGTGTCGATCAGCAGACTGTACGTCTCGGAGTGGATGTTTTCGATGG 355 Query 48453 CGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCT 48512 |||| ||||| ||||||||| | ||||| | ||||| || | ||| | | Sbjct 354 CGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGATTTGCACCTCGGACATGAAGCGCG 295 Query 48513 CCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAA 48572 || ||||| ||||| || || || || || ||||||||||| || || | | | Sbjct 294 TGGCGAGGTTCTCGTTGACGATGCCGTCCGACGCCGCAAAGAAGGCGAGCACGTTGGTGA 235 Query 48573 GGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCCTGTACGTCTTTGCCC---A 48626 || ||||||||||||| | |||| | | |||| | | ||| |||| | Sbjct 234 TAAAGTGGCGCTCGTTGTCGTTGAGCTTGGTGTCCCAGTCGGAGAGGTC---GCCCGCGA 178 Query 48627 GGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGT 48686 |||| | || ||| | |||||||| ||||| || || |||||||||| ||| |||| Sbjct 177 GGTCGATCTCCTCCGCCGTCCAGAACGACGCCTCGGCCTTCTTGTACATGCTCCAGATGT 118 Query 48687 CCGGATA 48693 | || || Sbjct 117 CGGGGTA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931412550759680