Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019527.1 Length=43551 Score E Sequences producing significant alignments: (Bits) Value seq406 93.3 1e-14 seq769 91.5 4e-14 seq2553 80.6 7e-11 >seq406 Length=38937 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 18794 CGACTGGTCGAGATTGACCAAATGGACGTGCTGGACATCCTGAAAGAGGATGGGGCACTC 18853 || ||||| || |||||||| |||||||||||||| |||||||| || || || | | Sbjct 26570 CGCCTGGTTGAAATTGACCAGATGGACGTGCTGGATATCCTGAACGACGACGGCGGGATG 26511 Query 18854 AAGCCGATCAGCGAGTGGCC-AAAGTGCTGGCGAACCACATTGAGCGGGCTGGACATCAA 18912 ||||||||| || ||||| ||||| |||||| ||| || | |||| | |||| ||| Sbjct 26510 AAGCCGATCGCTGAATGGCCGAAAGT-CTGGCGTACCTCACTAAGCGCGATGGATATCGC 26452 Query 18913 TACCA 18917 ||||| Sbjct 26451 TACCA 26447 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 18953 ATCCTCAAGAAGATCAAGTGGCCGGACAAGGTGAAGAACCTAGAGCTTATCGGCAAGCAT 19012 ||||| |||||| | |||||||||||||||||||||||||| || || || || ||||| Sbjct 26375 ATCCTGAAGAAGGTAAAGTGGCCGGACAAGGTGAAGAACCTCGAACTGATTGGTAAGCAC 26316 Query 19013 GTCCGCGTCGGGGCATTCAAAGAGC 19037 ||| ||| || |||||||||| Sbjct 26315 GTCGACGTTAACGCGTTCAAAGAGC 26291 >seq769 Length=5203 Score = 91.5 bits (100), Expect = 4e-14 Identities = 322/499 (65%), Gaps = 13/499 (3%) Strand=Plus/Minus Query 6393 GCCAGTCCCTCTGCGCCATCAGTGTTCAGGTGGTGAATGGCGTTATCAAGACGCTCACAG 6452 ||||| || || |||| || ||||||||||||||||| || | || || || Sbjct 1176 GCCAGGCCTTCGCCGCCGTCGGTGTTCAGGTGGTGAATCGCTTCCGACAGGCGGTCGTTC 1117 Query 6453 CGAGGCCAGTATTTTGAGCCACGCTTGACGATAGTCTTGCGCGCCATCTCAGACCAATCA 6512 |||||||| || || | ||||| |||| ||||| |||||||| | || Sbjct 1116 TTCGGCCAGTACTTGTAGGCGCGCTTCACGACCGTCTTCTTGGCCATCTCGCCGTAGTCG 1057 Query 6513 GTTTTCCATGGTGATGACTTACCTGACTTGAAGCTCTGGCTTCGCTGCATGATGGCATTG 6572 || ||||| || || ||||| || ||||| | ||| || | |||||| | | | Sbjct 1056 GTCTTCCAGGGCGACGACTTGCCGGACTTCACCGACTGCGACCGGTTCATGATCCCGTCG 997 Query 6573 ATCTCATCAACGCTCATTTCCTCAGTCAGGTAGTCACCCTGCGCGGTTTTTACAGTGCAG 6632 || || || |||||| | ||||||||||| || | ||||| || || | Sbjct 996 ATTTCGTCCTTGCTCATGGGCGTGGTCAGGTAGTCGCCGTCGGCGGTCTTGACCACAACG 937 Query 6633 TACCCGCCGACAACGGAGCCTCGGTCT---CCGAAGGCATTGTATTTGTGGGTTGGTGCG 6689 || ||||||| | || ||||| | ||| | ||| | ||| || |||| Sbjct 936 TAGGCGCCGACGATCTCACCGCGGTCCTTGCTGAACGGGTTGAAAACGTGCGTGGGTGGA 877 Query 6690 CTATCAAGGCCGTTCGACTCGTAGGTGTCATTGGCGCAAACCAGCTTGCACTGACCCCAC 6749 | || | ||||||| | || || |||| |||| ||||| | | ||| |||| Sbjct 876 CCGTCGAAGCCGTTCAGCGCGAAGTTGTCGCCAGCGCGCACCAGTTCGGCCTGGGCCCAA 817 Query 6750 TGAATAGCCCCAGACACCTGAGCAAGGTGAAGCAAGCCCATGTAGCTGATGTCGAGATGC 6809 | || | || | || || |||| | || ||||||||||||||||| || || Sbjct 816 CGGATCGAGCCGGTGGCCACGGCCAGGTCGATCAGACCCATGTAGCTGATGTCCAG--GC 759 Query 6810 ACA--CCTCCATCGCGAGGCACCAGGTAGGC---AAGCTTGGCCGCCGGGTTCAACGTAA 6864 | | | |||||||| ||||||| ||| || |||| ||| ||||||| | | Sbjct 758 AGATGCGCCCATCGCGCGGCACCAAGTACGCCTGGCGCTT---CGCTGGGTTCAGGCTGA 702 Query 6865 TGCCAATGGCCGCCACGTT 6883 |||| || || |||||||| Sbjct 701 TGCCGATCGCGGCCACGTT 683 >seq2553 Length=3545 Score = 80.6 bits (88), Expect = 7e-11 Identities = 330/511 (65%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 6392 AGCCA-GTCCCTCTGCGCCATCAGTGTTCAGGTGGTGAATGGCGTTATCAAGACGCTCAC 6450 ||||| |||| ||| |||| || ||||||||| ||| || || | ||| || || || Sbjct 1325 AGCCAAGTCCTTCTTCGCCTTCGTTGTTCAGGTAGTGGATTGCCTGATCGAGTCGTCCAG 1266 Query 6451 AGCGAGGCCAGTATTTTGAGCCACGCTTGACGATAGTCTTGCGCGCCATCTCAGACCAAT 6510 |||||| || || ||||||||| || |||||| |||||||| | | Sbjct 1265 TTTTAGGCCATAGCTTCGATGCACGCTTGATGACAGTCTTCTTTGCCATCTCGCCGTAGT 1206 Query 6511 CAGTTTTCCATGGTGATGACTTACCTGACTTGAAGCTCTGGCTTCGCTGCATGATGGCAT 6570 | || | ||| || ||| || || ||||||| | ||| | ||||| ||| Sbjct 1205 CGGTGTCCCAAGGGCTTGATTTGCCAGACTTGACCGATTCAGAGCGCGACTTGATGCCAT 1146 Query 6571 TGATCTCATCAACGCTCATTTCCTCAGTCAGGTAGTCACCCTGCGCGGTTTTTACAGTGC 6630 | ||| ||| ||||||| | ||||||||||| || | ||||| || | | Sbjct 1145 CAACTTCAGCAATGCTCATTGCAGTTGTCAGGTAGTCGCCGCTTGATGTTTTGAC-GACC 1087 Query 6631 AG-TACCCGCCGACAACGGAGCCTCGGTCT---CCGAAGGCATTGTATTTGTGGGTTGGT 6686 | || | |||| | | ||| || ||| ||||| | ||||||| ||| |||| Sbjct 1086 ACATAGACTCCGATCAGGCCGCCGCGATCTGTGCCGAACGGGTTGTATTCGTGAATTGGC 1027 Query 6687 GCGCTATCAAGGCCGTTCGACTCGTAGGTGTCATTGGCGCAAACCAGCT-TGCACTGACC 6745 | ||||| |||| | || | | ||||||| | | | | || | ||| || || Sbjct 1026 GGTTGATCAAAGCCGCGCAGCTTGAACATGTCATTCGAGTAGGCGAGTTCTGCT-TGGCC 968 Query 6746 CCACTGAATAGCCCCAGACACCTGAGCAAGGTGAAGCAAGCCCATGTAGCTGATGTCGAG 6805 ||| | || | || || | ||| || | || ||||| || || || ||||| || Sbjct 967 CCAAAGGATTGAACCCGATTGCACAGCCAGATCCAGTAAGCCGATATAACTAATGTCCAG 908 Query 6806 ATGCACACCT--CCATCGCGAGGCACCAGGTAGGCAAGCTTGGCCGCCGGGTTCAACGTA 6863 ||| | | || | ||| || || |||||||| |||| ||||||||||| | Sbjct 907 --GCAAATTTTGCCTTTGCGCGGAACAAGGTAGGCTTGCTTCTTGGCCGGGTTCAAGCTG 850 Query 6864 ATGCCAATGGCCGCCACGTTGATGATCGCAT 6894 ||||| || ||||| | |||| ||| |||| Sbjct 849 ATGCCGATAGCCGCAATGTTGGTGACTGCAT 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139224524367462