Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq250 212 2e-50 seq5011 141 3e-29 seq329 116 1e-21 seq1432 98.7 3e-16 >seq250 Length=59172 Score = 212 bits (234), Expect = 2e-50 Identities = 526/791 (66%), Gaps = 12/791 (2%) Strand=Plus/Minus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 ||||| | || || ||| ||||||| || | | || |||||| || || || Sbjct 46960 ATGAAGCCCTACCTGGACCTGCTGCAGCACGTGCTGGAGAACGGCACCGAAAAGTCCGAC 46901 Query 45497 CGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGAC 45556 || || || || ||||| ||||||||| | ||| ||||||| ||| || ||| Sbjct 46900 CGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCAACCTGGGCGAC 46841 Query 45557 GGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTC 45616 || |||||||| || || || || ||| |||| | || |||||||| |||| ||||| Sbjct 46840 GGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGGTCGATCATCCATGAGCTGCTG 46781 Query 45617 TGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGG 45676 ||||| | || ||||| || || | |||| | || || ||| || ||| Sbjct 46780 TGGTTCCTGAAGGGCGACACCAACATCGGCTACCTCACCGACAACCAGGTGCGCATCTGG 46721 Query 45677 GACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCG 45736 |||||||||||||||| |||||||| || || || ||||||||| ||||||||| Sbjct 46720 GACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGGCGCAGC 46661 Query 45737 TGG---AAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGG-TCTTTAAGGAAAT 45792 ||| | | | || ||| | | ||||||| | ||| | || | | |||| || Sbjct 46660 TGGGCCACCGCCGATGGCGGCAGCA---TCGACCAGA-TGCAGTGGCTGGTGGAGGAGAT 46605 Query 45793 CAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGG 45852 |||||||||||| | ||||||||| || | || ||||| |||||||||| || || Sbjct 46604 CAAGCGCAACCCCGATTCGCGGCGGCTGGTGGTCAGCGCCTGGAACGTGGGCGAGCTGTC 46545 Query 45853 GGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTT 45912 | | ||| |||| || || || || || ||||| ||||| | | | ||| | | Sbjct 46544 GCAGATGGCGTTGATGCCCTGCCACAACCTGTTCCAGTTCTACGTGGTGGACGGCAAGCT 46485 Query 45913 GTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGC 45972 ||| || | | ||||| | ||| | || || || ||||||| |||||||| Sbjct 46484 CAGCTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGTTCAACATCGC 46425 Query 45973 TAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACT 46032 ||||| || ||| | || || ||||| || || || || | || ||||| | Sbjct 46424 CAGCTACGCACTGCTCACCCACATGGTGGCGCAGGCCACCGGGCTGGGCGTGGGCGACTT 46365 Query 46033 CATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCA 46092 | | ||| ||||||| ||| ||||| || || | || || ||| ||| Sbjct 46364 CGTGCATACCCTGGGCGACGCGCATCTGTACTCCAACCACGTTGACCAGGCGCGCGAGCA 46305 Query 46093 GCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAA--CGGAAGCCGCCGTCT 46150 |||| ||||| ||||||| |||||||| |||| ||| | || ||| | | ||| | Sbjct 46304 GCTGTCGCGCACGCCGCGCGCGCTGCCGCAGCT-GTGGTTGAACCCGGCGGTCACCGAC- 46247 Query 46151 ATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGATT 46210 | || | || | | ||| || | | | |||||| ||||||||||||||||| Sbjct 46246 CTGTTCGGCTTCCAGTTCGATGACATCCGCATCGACGGCTACGACCCGCACCCGGCGATC 46187 Query 46211 AAGGCTCCTGT 46221 ||||| || || Sbjct 46186 AAGGCGCCGGT 46176 >seq5011 Length=2423 Score = 141 bits (156), Expect = 3e-29 Identities = 341/515 (66%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || ||||||||| || || |||||| ||| |||| || | || | Sbjct 953 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 894 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 | || || || | ||||||| || || ||||| || || ||||| | || ||| Sbjct 893 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 834 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || ||||| | |||||||| ||||| | |||| | |||| || || |||||||| Sbjct 833 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 774 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| || |||||||| || |||||||||||||| || |||| ||| || ||||| Sbjct 773 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 714 Query 45734 TCGTGGAAAGGGGCTGACG---GGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAA 45790 || ||| | | | |||| || | | |||| || |||||| || | | | Sbjct 713 TCCTGGCCTGCGCCCGACGGCCGGCATA---TCGATCAGATTGCGAATCTCGTCAGTGCG 657 Query 45791 ATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTG 45850 || |||| || || | |||||||| || | || ||| ||||| ||| | Sbjct 656 ATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTC 597 Query 45851 GGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGG 45910 | |||||| | |||| || || || | | || ||||| ||||| || | || | Sbjct 596 GATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAG 537 Query 45911 TTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATC 45970 | || ||| | | ||||| || | ||||| ||||| || ||||||| || ||| Sbjct 536 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 477 Query 45971 GCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || |||||| ||| |||| | ||||| || || Sbjct 476 GCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 442 >seq329 Length=161735 Score = 116 bits (128), Expect = 1e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 |||||||||||||||| | | || |||| |||| || | || ||| | ||||| | Sbjct 13151 GGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAG 13210 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | || || || || || || ||||| | ||| | || || || | |||||| ||| Sbjct 13211 GCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGATCT 13270 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||||||| || || || ||| || |||| || | | || ||| | ||| |||| Sbjct 13271 GGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGG 13330 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 | |||||||| ||||||||||| || || ||||| | || || | |||||||| || | Sbjct 13331 ATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTCAT 13390 Query 45738 GG 45739 || Sbjct 13391 GG 13392 >seq1432 Length=12607 Score = 98.7 bits (108), Expect = 3e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580 || ||||| |||||| | ||||| | || | | || ||||| ||| | || || || Sbjct 8438 GTCTTCGGGCGTCAGATCCGCTTCGATCTGTCGAAGGGCTTCCCCCTCATCACCACCAAG 8497 Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640 |||| || || ||| || || || |||||||| | | || ||| | || Sbjct 8498 CGCGTGCACTTCAAATCCATCGCGTACGAGCTCCTCTGGTTCCTGCAGGGTGATTCCAAC 8557 Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700 || | | | | ||||| || || ||||| ||||||||||||||||||||| |||| Sbjct 8558 GTCGGGTGGCTCCGCGAGAACGGGGTCACGATCTGGGACGAGTGGGCCGATGAATCCGGC 8617 Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGG 45739 || |||||||| ||||||| | ||| ||||| |||||| Sbjct 8618 GACCTCGGCCCGGTCTACGGGGTGCAGTGGCGTTCGTGG 8656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157731054575478