Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq4950 141 3e-29 seq406 136 1e-27 seq4719 96.9 1e-15 >seq4950 Length=777 Score = 141 bits (156), Expect = 3e-29 Identities = 139/177 (79%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 45770 CACTACCACGGTAACGCCGTGAAATACAAAGAGCAGCGCGATACCGTTACTCATA-AGCT 45828 || |||| | ||||||| | | ||||||| |||||||| | | | || | | || Sbjct 272 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACT 214 Query 45829 GGCGCTGGCGAACGCGACAATTACCGACATGACGAAGCGTCAGCATGATGTTGCTGCGCT 45888 | ||||||||||||| ||||||| |||||| || ||| |||| |||||||||||| || Sbjct 213 GAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACT 154 Query 45889 CGACGCCAGATACACGAAGGAATTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 45945 || | | |||||||||||| |||||| ||||||||||||||||||||||||| || Sbjct 153 GGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 97 >seq406 Length=38937 Score = 136 bits (150), Expect = 1e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 30133 ACTGCGTTGACCAGTTGTGCCTCGTAACCAAGAACACCGTTAACCAGGTGTGTTTTCTGA 30192 || ||||| ||||| || || || |||||||| |||||||||| ||||||||||| Sbjct 35217 ACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTCTGC 35158 Query 30193 GCCACAGCGTAAGGGTTCATGCCCCATTGCATAGCCTGCATGACGATAGCCATACAGTCG 30252 ||||||||| | |||||||||||||| ||| ||||||||| | ||||| ||||| Sbjct 35157 GCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAGTCA 35098 Query 30253 GCTGGTTTCCCTGCAAGGTGTGCCGGTACCGTCACCTGTGAGTCTGCCATCAGGTTAGCG 30312 || || || ||||| ||||| || || || || ||| ||| ||||||||| | ||| Sbjct 35097 GCAGGCTTTCCTGCCAGGTGCGCAGGAACGGTGGCCTTACTGTCAGCCATCAGGGTTGCG 35038 Query 30313 AAA 30315 ||| Sbjct 35037 AAA 35035 >seq4719 Length=950 Score = 96.9 bits (106), Expect = 1e-15 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 47077 GCGTTGTATCGTCGCAGTANNNNNNNATTAACAATGACCGCAGCCCTTAATGGGAGCTCC 47136 ||| ||||||||||| ||| |||||| ||||||| ||||| | |||| ||| Sbjct 319 GCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCG-ACGGGGAATTCC 261 Query 47137 TTCTGCGTGAGTGTGCAATGATAATCAATAACGATGCATACCGGGGTTTGCAGCTTTTTC 47196 |||||||||||||||| |||||||| ||||||||| |||||| ||| | | | | Sbjct 260 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTTACTGTGCTGAC 201 Query 47197 GATGGCTGGTTTATCCCTCATTGCTCGCCATCTCGATGCGGGGGTAGAAGAAATCGAGAG 47256 || || ||| ||||||| | |||| | || |||| ||| ||||||| || || Sbjct 200 AGACGCAGGGTTA-CCCTCATAG-TCGCTTTTCCGGTGCGATGGTGGAAGAAACCGGGA- 144 Query 47257 TGTTT 47261 ||||| Sbjct 143 TGTTT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151395831578958