Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq846 1045 0.0 seq4950 260 3e-65 seq2798 199 9e-47 seq447 156 1e-33 >seq846 Length=12855 Score = 1045 bits (1158), Expect = 0.0 Identities = 1039/1343 (77%), Gaps = 2/1343 (0%) Strand=Plus/Plus Query 20727 AGGTCATTATTAGTCAAAATAAAATCATTTGTCGATTTCAATTTTGTCCCATTCCCGTCC 20786 |||||| ||| |||||||||||||||||| | |||||||||||||||||| |||| || Sbjct 183 AGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTCCCACTCCCTGCC 242 Query 20787 ACGGCTGTCCCTATACCGCGCCGCCATTGAATCTGATTTATGCCCGAGAAGACGTTGAGC 20846 | | || | |||| | | ||||| | || || ||||||||||||||| ||||||| Sbjct 243 TCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAGAAGATGTTGAGC 302 Query 20847 AAACTTATCGCCAATCTGGTTCCGGTATAGCCTCGCTGACAGGCTACGCAGTTCATGGAA 20906 ||| ||||||| ||||| ||| || || || || |||| || |||| || || || Sbjct 303 AAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCGCAACTCGTGAAA 362 Query 20907 TGTTGGCGGGTTTCCATCAAATGAGAGTCCAGATGCATTTCTCGCCTTTGTAAAATACTT 20966 |||||||| | || || || ||||| || ||||| |||| || |||||||| | Sbjct 363 GGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTCGTGCGCGCATAAAATACCT 422 Query 20967 TGATACTGTTTTCGGGGAAAGCGGATCGTGATGCTTTGATGCGATTATAGTTTCACTGCT 21026 ||||||||| | |||||||| || || | | ||||| ||||| ||||| | || Sbjct 423 TGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATGCAATTATGGTTTCTCCGCC 482 Query 21027 GCTGGCCTCCCTGCATTGCTGTAGTGTATCAGCCAATGAGATATTGAGCGCGTCAATCGT 21086 || |||||| | ||||| || || ||| || ||| || |||| Sbjct 483 AAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATATCCCGAGAGCATCAACATG 542 Query 21087 TAGCGTTAGTGGAATGGCGAGTTTAGCCCCTGTTTTACTCTGTTCAATGTGAAGATGGTT 21146 | ||| ||| ||||| | ||| | |||||||| || || || | | ||||| Sbjct 543 CAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGACATAAAGATATCC 602 Query 21147 GTCGTTTATGTCTGACCATTTCATTCTGCACAAATCGCCTACTCTCTGCCCTGTAACGAC 21206 || || || ||||| |||||| ||| ||||| || |||| |||||| ||||| || Sbjct 603 ATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGCTGCCCGGTAACAAC 662 Query 21207 AGCCAAATCCATTGCCAGTCTCAGCCAGATTGGGAGCGGTTCGGCCGCATGGTATATCGC 21266 ||||| |||||||| ||||| ||||| ||| | ||| || || || || || Sbjct 663 AGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATTCTGCTGCTTGATAAATTTT 722 Query 21267 GACATATTCATTAGCTGTCAGTCTTGAACGCCTTACTTCTGATTTTGCTGTGCGGGTTGC 21326 | ||||| | ||| || |||||||| | |||||| ||||||||||| | ||| || || Sbjct 723 CAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGCAGCGCGAGTGGC 782 Query 21327 TGTTACCGGATTCGTAGCCACATGCCCCTCGGCTATTGCCTCACGAAAAACGTCAACAAG 21386 || ||||| || || | | ||| || || ||||| ||||| || || | || || Sbjct 783 TGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCTCTCGGAATGCATCGCTCAG 842 Query 21387 GGTTGACCTGATTAATTTTGCGGAAGCCGATTTGCCTTCTGCTACGTAGGTGTTTAGCAT 21446 ||||| |||||||| || || || |||| ||||| || ||| ||| || ||||| Sbjct 843 TGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGTCTATGTATCCATTGAGCAT 902 Query 21447 TGCTGCCACCTCTTTCGTTGATATGTCAGCGAGCGGTTTGTCAGGCAATTTTCTTCGGAT 21506 ||| || | ||||| || | ||||| | || || ||||||| || | || Sbjct 903 TGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAGACCCCTCCTTAT 962 Query 21507 TGCTCTGATTTTGCTGGCGTAGTCGAGTAGAGTTTTCGGCCTGATACCCCT-CTCGCTGA 21565 |||| | |||||||| ||| | | || || ||| || |||| || || || || | Sbjct 963 TGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCCTCTGCTGGC-CA 1021 Query 21566 GGATTGTTTCATATCGGTCAAGCCACGCATGAAGAGTGATTGCGTCAGCGCCTTTAATTC 21625 ||||| |||| || || |||||||| | ||| | || | | | | | | || |||| Sbjct 1022 GGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATTATCACTGTTGATTC 1081 Query 21626 TGTCTATCAGTGACTCACGCCTGTTCCCGGATAGCAACTCAATGTTGGCCTGTATAGCTT 21685 | || |||| | || | ||| || || | ||||||||||||||||||||||||| Sbjct 1082 TCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGCCTGTATAGCTT 1141 Query 21686 CAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGTCCTTGGGTCCC 21745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1142 CAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGTCCTTGGGTCCC 1201 Query 21746 TGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATCCCGGCGCTCAT 21805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 TGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATCCCGGCGCTCAT 1261 Query 21806 GACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTATCTGTTACTGGTCGATTT 21865 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1262 GACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTACTGGTCGATTT 1321 Query 21866 AAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCTTAACCGGAGGA 21925 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 AAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCTTAACCGGAGGA 1381 Query 21926 GGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTCTTGGGCGTCGC 21985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1382 GGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTCTTGGGCGTCGC 1441 Query 21986 TGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGCAATTACACGCA 22045 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 TGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGCAATTACACGCA 1501 Query 22046 AGAAAAAGCCGCATTGATGCGGC 22068 ||||||| |||| | | ||||| Sbjct 1502 AGAAAAAACCGCCATCAGGCGGC 1524 >seq4950 Length=777 Score = 260 bits (288), Expect = 3e-65 Identities = 222/271 (82%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 34997 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCA 35056 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 344 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 285 Query 35057 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGAGATAAAAAA 35116 |||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 284 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 225 Query 35117 GTCAGTGAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGCGGAAGCGTCAACGTGAT 35176 | ||| || ||||||| ||||| ||| | || ||||||||| || ||| || |||||| Sbjct 224 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 165 Query 35177 GTAGCAGAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 35235 || || | ||| || | || |||||| |||||| | ||| |||| || || || || || Sbjct 164 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 106 Query 35236 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 35266 ||| |||| || |||| | ||||||||| Sbjct 105 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 75 >seq2798 Length=1848 Score = 199 bits (220), Expect = 9e-47 Identities = 128/139 (92%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 20475 TTGACAAAAAATTAGCGCAAGAAGACAAAA--ATCACCTTGCGCTAATGCTCTGTCTCAG 20532 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1529 TTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAG 1588 Query 20533 GTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGCGTTTTGTCGCA 20592 ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 1589 GTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCA 1648 Query 20593 TTATGTAGTCTATCATTTA 20611 ||||| ||||||| |||| Sbjct 1649 TTATGCAGTCTATTTTTTA 1667 >seq447 Length=48793 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 12355 CGATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 12414 ||| ||| | ||||| | ||||| || ||| | ||||||| | || ||||| || Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12415 AAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-T 12470 ||||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12471 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12530 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12531 TGTTGCGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12589 || ||||| || || || || | |||| |||| || || || || | ||| | Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 27718 Query 12590 CGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGA 12649 ||| || ||||||| ||| | |||| || || || ||||| || || || ||||| Sbjct 27719 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 27778 Query 12650 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGC 12707 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 27779 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 27838 Query 12708 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 12767 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 27839 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 27896 Query 12768 GAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12826 ||||||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 27897 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 27955 Query 12827 TGTGCTTGGACACTTCGACTGCTGG 12851 ||| | ||| || ||||||||| Sbjct 27956 TGTACATGGCGCCTGGGACTGCTGG 27980 Score = 96.9 bits (106), Expect = 8e-16 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15459 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15518 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15519 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15578 | | || || |||| | ||||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15579 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15638 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15639 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15698 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 15699 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACATGCC 15749 ||||||| | | || ||| ||||| || || || |||||| |||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 32608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120167661656718