Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq846 392 9e-105 seq1338 277 5e-70 seq4950 178 4e-40 seq1110 104 7e-18 seq2747 89.7 1e-13 seq83 89.7 1e-13 seq40 87.8 5e-13 >seq846 Length=12855 Score = 392 bits (434), Expect = 9e-105 Identities = 237/250 (95%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 23926 AAAAAACCGCCATCAGGCGGTTTTGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 23985 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1504 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 1563 Query 23986 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTGAAGTCCTC 24045 |||||||||||||||||||||||| | |||||||||||||||||||||| ||| || ||| Sbjct 1564 GTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTGATGTTCTC 1623 Query 24046 TGCTTCGATAACCCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGAAAGTGCAT 24105 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1624 GGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAGTGCAT 1683 Query 24106 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGA 24165 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1684 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCA 1743 Query 24166 GTGCGAGGAT 24175 |||||||||| Sbjct 1744 GTGCGAGGAT 1753 >seq1338 Length=18756 Score = 277 bits (306), Expect = 5e-70 Identities = 552/807 (68%), Gaps = 22/807 (3%) Strand=Plus/Plus Query 7608 TTTGACGGGCGCCCTGTTTTTCTTGAAGAGCAGGATCTCCCTGCCGTGGCTGTATACCTT 7667 ||||| || ||||| | | || |||| ||| |||| | || || | || || || || Sbjct 7743 TTTGATGGTCGCCCCGCTGTTTTTGATGAGGCGGATTTTCCGGCAATTGCCGTTTATCTC 7802 Query 7668 TCTGACGCGGAGTACACCGGCGACTCGCTTGACGAAGATTCGTGGCAGGCGGTTGTTCAC 7727 | | ||| || ||||| ||||| ||| ||| ||| | |||||||||| | || Sbjct 7803 ACCGGCGCTGAATACACGGGCGAAGAGCTGGACAGTGATACCTGGCAGGCGGAGCTGCAT 7862 Query 7728 ATCGAGGTATTTCTTAAAGCCTCC--AGC--CCCGACAGCGCGCTTGATTCCTGGATGGA 7783 ||||| || || || |||| | || || || | ||| ||||| |||||||| Sbjct 7863 ATCGAAGTTTTCCT----GCCTGCTCAGGTGCCGGATTCAGAGCTGGATTCGTGGATGGA 7918 Query 7784 AGAGAAAGTGTATCCGGCAATGGCCTTCATCCCGGGTCTGACCGAACTGGTCG--AG-AC 7840 | ||||||| ||| | ||||||| ||| | || || || || | Sbjct 7919 GTCCCGGATTTATCCGGTGATGAGCGATATCCCGGCACTGTCAGATTTGATCACCAGTAT 7978 Query 7841 GTTCACCCCGCAG-GGTTATGACTATCAGCGGGATGATGAAATGGCCACCTGGGGTTCAG 7899 | | || || || |||||||| | ||| || ||||| || | ||| |||| | Sbjct 7979 GGTGGCC----AGTGGCTATGACTACCGGCGCGACGATGATGCGGGCCTGTGGAGTTCTG 8034 Query 7900 TCGATTTCACGTACTTAATCACCTATTCAATTTAAGAGGTACTTATGCCTACTCCAAACC 7959 |||| | ||||| | || |||||| ||| | |||| ||||||| ||||| | Sbjct 8035 CCGATCTGACGTATGTCATTACCTATGAAATGT--GAGGACGATATGCCTGTACCAAATC 8092 Query 7960 CGCTGGCCCCCGTGAAAGGTGCCGGTACCACACTCTGGCTTTACACCGGAACGGGCAACG 8019 | || |||||||||||||| ||||| || ||| |||| | ||| | ||| || Sbjct 8093 CAGCAATACCGGTGAAAGGTGCCGGAACCACCCTGTGGGTTTATAACGGGAGCGGCGACC 8152 Query 8020 CTTTCGCTAACCCACTCTCGGATATCGACTGGAACCGCCTGGCGAAAATTAAAGAGCTGA 8079 ||| || ||||| || || || | |||||| || ||||| ||| ||||||| |||| Sbjct 8153 CTTATGCGAACCCGCTTTCAGACGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGA 8212 Query 8080 CGCCGGGCGAAATGACCGCAGAATCGTATGACGACACTTACCTCGACGACGAGGATGCCG 8139 |||| |||||| ||||||| || || |||||||||| ||| ||||| || || ||||| | Sbjct 8213 CGCCCGGCGAACTGACCGCTGAGTCCTATGACGACAGTTATCTCGATGATGAAGATGCGG 8272 Query 8140 ACTGGAACGCGACGGCCCAGGGGGCAAAATCTGCTGGCGATACCTCGTTCACCCTCGCCT 8199 |||||| |||||| | |||||| ||||| || || |||||| ||||| || || | Sbjct 8273 ACTGGACCGCGACCGGGCAGGGGCAGAAATCCGCCGGAGATACCAGCTTCACGCTGGCGT 8332 Query 8200 GGAAGCCGGGCGAAGAAGGGCAAAAAGACCTTGTCGCATGGTTTATTGATGGCTCAGTA- 8258 ||| ||| || || | ||||| | | || | || ||||||| ||| || | | || Sbjct 8333 GGATGCCCGGAGAGCAGGGGCAGCAGGCGCTGCTGGCGTGGTTTAATGAAGG-TGA-TAC 8390 Query 8259 -CGTTATTACAAAATCAAATACCCGAACGGTACCGTCGACGTTTTCTGTGGCTGGTGCAG 8317 ||| || |||||| | ||||||||| || ||||| || ||| |||||||| ||| Sbjct 8391 CCGTGCCTATAAAATCCGCTTCCCGAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAG 8450 Query 8318 CAGCCTGGGTAAAGCCATTCCGGCAAAAGAGGTCATTACCCGTACAGCGAAAATCACCAA 8377 ||| | ||||| || | |||| || || || || |||||||| | ||| ||||||| Sbjct 8451 CAGTATCGGTAAGGCGGTGACGGCGAAGGAAGTGATCACCCGTACGGTGAAGGTCACCAA 8510 Query 8378 TACCGGCAAGCCGGAACTGGCAGAAGA 8404 | ||| ||| | |||||||||| Sbjct 8511 TGTGGGCCGTCCGTCAATGGCAGAAGA 8537 Score = 134 bits (148), Expect = 4e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 12346 GGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 12405 || || ||||| || ||||||||| || |||||||| || || |||||||| || ||| Sbjct 11887 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAA 11946 Query 12406 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 12465 || |||||||| || || |||||||||| || ||||||| |||||||| || |||||| Sbjct 11947 TTTGTCTTCACAAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTCTACCGGCTGATG 12006 Query 12466 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 12494 ||||| |||||| | |||||| ||||| Sbjct 12007 CGCGGCTATGCCACCGGTGGTTATGTCGG 12035 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 11569 CTTCTCACCCTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATATCAGCGTAAACGACGTT 11628 || || || |||||||| | || ||||| ||| ||||| | | | ||| || Sbjct 11104 CTGCTGACGCTTCAGGCTGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAA 11163 Query 11629 ATCAGCAAACAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAG 11688 |||||| | ||||| | |||| | ||| || | || | ||||||| | || ||| ||||| Sbjct 11164 ATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAG 11223 Query 11689 GCCGCGGGGCGTCGTCAGCTTACGGCGCAGGAAAAATCACTGCTGGCGCACAAGGAAGAA 11748 || ||| ||||| ||||| | || ||||| ||||| ||||||||||| || || || Sbjct 11224 GCGGCGCAACGTCGCCAGCTGTCCGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAG 11283 Query 11749 ACGCTCGAGTACAAGCGGCAGCTGGCCGACCTGGGAGATAAGGTT 11793 ||||| |||||||| || |||||||| | || || || |||||| Sbjct 11284 ACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 11328 Score = 127 bits (140), Expect = 6e-25 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 9106 GTTACCGCGGAAAAGCCCTTGCCAGCGAGCTGAAGTTTGTCCTGAATCTGGCGCGCGAGT 9165 ||| | |||| |||| | | | | ||||||| |||| |||||| |||||||||||| Sbjct 9223 GTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGCGAGA 9282 Query 9166 TCGGTCGACCCGACTGGCGCGCCATGCTGGCTGGGATGACTTCCAGTGAACTGGGCGACT 9225 | || |||||||||||||| |||||||| || |||||| | |||| || | ||||| Sbjct 9283 TGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGTATGCCGACT 9342 Query 9226 GGCACCTGTTCTACCGGGAGCATTATTTTCAGGACGCGCAGCTCGATGCGCATTTCTCCG 9285 |||||| || ||| | ||||||||||| || | | ||| ||| ||| || |||| Sbjct 9343 GGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGCACTTTTCCG 9402 Query 9286 GGCTGCTTTATTCCATCTCCACTCTTTTCTTCCGCGATCCGGA 9328 ||||| || || | || || || ||| |||||||||| Sbjct 9403 GGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 9445 >seq4950 Length=777 Score = 178 bits (196), Expect = 4e-40 Identities = 109/116 (94%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 42085 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 42144 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 344 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 285 Query 42145 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGAACAGCGCGATAA 42200 ||||| |||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 284 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAA 229 >seq1110 Length=7634 Score = 104 bits (114), Expect = 7e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 22061 TCCTATTATCGGCACCATTTAAATCAATGAGTTACCTCGCATTTAAGTAAACCACGTTCT 22120 ||||||||||| ||||||| ||||||| |||||||| | |||||| || |||||||| | Sbjct 147 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 90 Query 22121 CCTCTTGTGCCGTATTTGTGCCATTG 22146 |||| ||||||||||||||||||||| Sbjct 89 CCTCCTGTGCCGTATTTGTGCCATTG 64 >seq2747 Length=1393 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 22083 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 24 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 75 >seq83 Length=313169 Score = 89.7 bits (98), Expect = 1e-13 Identities = 173/250 (69%), Gaps = 14/250 (6%) Strand=Plus/Minus Query 18504 TACGCTGCCGGGATGGGGATTGGGGTTCAGAATACACCCTCCGGCATGCAGTCACAGGTA 18563 ||||| || || || || | || || |||| || || |||||||| || ||||| Sbjct 4361 TACGCCGCAGGCATCGGTGTGGGCGTCGAGAACACGCCAGAAGGCATGCAATCGCAGGTC 4302 Query 18564 ATATTCCTGGCCGACCGATTTGCTGTTACCACTGCTGCCGGAAACAGCGTGGCGTTACCA 18623 | |||||||||||||| || ||| | | || | ||| ||| |||| | | ||| Sbjct 4301 CTTTTCCTGGCCGACCGCTTCGCTTTCATCAAT-CTG--ATCAACGGCGT--CATATCCA 4247 Query 18624 -----TTTGTGATCCAGAATGGTCAGACGTTCATCAGGGCCAG--CTTCATTCAGGACGG 18676 |||| ||||||| || ||||| ||||||| |||| ||| || || ||||| Sbjct 4246 CGCCGTTTGCGATCCAGGGAGGGCAGACCTTCATCA--ACCAGGCCTTTATCCAAGACGG 4189 Query 18677 TACCATTGAGAACGCCAAAATCGGTAACTATATCCAGTCGAATAACTATGTGGCTGGCTC 18736 || || | |||||| ||||| | || |||||||| ||||||| || ||||||| Sbjct 4188 CACGATCACCAGCGCCAAGATCGGGGAGTACATCCAGTCCAATAACTTCGTAGCTGGCTA 4129 Query 18737 TGCAGGCTGG 18746 | ||||||| Sbjct 4128 TCAAGGCTGG 4119 >seq40 Length=145790 Score = 87.8 bits (96), Expect = 5e-13 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 16053 TTCAAAATGGCATGGTCCAATAACCCTGCCTGGATCTTTTACGATCTGGTTCTGGATGAA 16112 ||||| |||| ||| |||| ||||| |||||| | || ||||| ||| | |||| Sbjct 97511 TTCAAGCTGGCCTGGACCAACAACCCGGCCTGGGTGTTCTACGACCTGATCAGCAATGAT 97452 Query 16113 ATTTACGGCATGGGCACGCGCGTGGATGCGTCCATGGTGGATAAGTGGGCGCTGTATTCA 16172 || ||| ||||||| |||||| || | | |||| ||||||| ||||| Sbjct 97451 CGCTATGGCCTGGGCACCCGCGTGCCCGCCGGCTGGCTGGACAAGTGGGGCCTGTACCAG 97392 Query 16173 ATCGCCCAGTACTGTGACGAAATGGTTTCCGACGGGGCCGGTGGCACCGAACCGCGTTTC 16232 || | || || || ||||| ||||| |||||| || |||| |||||||| ||| Sbjct 97391 ATTGGCCGCTATTGCGACGAGATGGTCGACGACGGCTTTGGCGGCAAGGAACCGCGCTTC 97332 Query 16233 ACCTGCAACGT 16243 ||||||||||| Sbjct 97331 ACCTGCAACGT 97321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141045101077068