Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq406 327 3e-85 seq2281 149 2e-31 seq447 132 1e-26 seq83 84.2 6e-12 >seq406 Length=38937 Score = 327 bits (362), Expect = 3e-85 Identities = 401/545 (74%), Gaps = 2/545 (0%) Strand=Plus/Minus Query 35177 CGCGCTGGTTTCAGCCAGTCACCGATGCGATGAAAGAATTCGGCATT-ACCAAGCCGGTA 35235 ||||||||| || || |||||| || |||||||| || ||||| | ||| ||| | Sbjct 1299 CGCGCTGGTATCTGCATATCACCGCGGCAATGAAAGAGTTTGGCATCGAACAA-CCGCTG 1241 Query 35236 GACCAGGCCATGTTCATTGCGCAGGTTGGGCATGAATCAGCTGGCTTCACTCTCCTGGTG 35295 ||||||| ||||| || |||||||| |||||||| || | ||||| || | ||| | Sbjct 1240 CACCAGGCGATGTTTATCGCGCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAG 1181 Query 35296 GAGAGCTTCAATTACCGGATTGCCGCACTAGTTAACTTCATTCGTGCAGGACGCCTTACC 35355 || | |||||| ||| | | || | || | ||| | ||| | || ||||| || Sbjct 1180 GAAAACTTCAACTACAGCGTAGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACT 1121 Query 35356 GCAGAACAGGCAAACGCGTTAGGCCGCCGCCCTGAAGAACGGACATTACCGATTGAGCGC 35415 | ||||| |||||| | ||||| || ||| |||| | |||||| | |||||| Sbjct 1120 CAGGGTCAGGCTAACGCGCTGGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGC 1061 Query 35416 CAGCGAGCCATTGCGAACCTGGTATACAGCAAACGCATGGGTAACAACGCACCCGGCGAC 35475 ||||| || || || |||||||| ||||||||| | ||||| ||||||| || ||| Sbjct 1060 CAGCGTGCGATCGCCAACCTGGTGTACAGCAAAAGAATGGGGAACAACGGTCCGACTGAC 1001 Query 35476 GGCTGGTTATACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAACAACTACCGTGAT 35535 |||||||| |||| ||||| |||||||||||||| ||||| || |||||||| || || Sbjct 1000 GGCTGGTTTTACCTCGGGCGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGAC 941 Query 35536 TGTGGAAACGGCCTGAAAGTTGATCTGGTTAAGCAACCTCAGTTGCTCGCTGAAGACGTA 35595 || || || |||||||| || |||||||||||||| ||| || |||| || | |||| | Sbjct 940 TGCGGCAATGGCCTGAAGGTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAA 881 Query 35596 TACGCGGCAAGAAGTGCGGCATGGTTCTTTGTCACTAAGGGCTGCCTTAATCATTCTGGC 35655 |||||||| | || ||||| |||||||| | || || |||||| | || | | ||| Sbjct 880 TACGCGGCCCGCAGCGCGGCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGC 821 Query 35656 GACCTGATGCGCGTGACGAAGATTATCAACGGCGGAACGAACGGACTGGAAGATCGTCGC 35715 |||||| ||||||| ||| |||| ||||| || || |||||| | || || || || Sbjct 820 GACCTGGTGCGCGTCACGCAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGT 761 Query 35716 GCTCG 35720 || || Sbjct 760 GCGCG 756 Score = 223 bits (246), Expect = 9e-54 Identities = 189/233 (81%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 23050 ACCGGCATCGGCACTCGGATAACCAGCTTTTTGAGTCTGTCTATCTCAGCTGCGTGCTCC 23109 |||||||||||||| |||||||||||| | |||| | |||| ||| |||| |||||| Sbjct 27919 ACCGGCATCGGCACGCGGATAACCAGCCTGCGGAGTTCGGCTATTTCATCTGCCTGCTCC 27978 Query 23110 AGCGCGATATCCTTCCAGTCCTGCGCTTCGGCCATCCACCAGGCTACATCTGCTTTAAGG 23169 | | | | | | |||| ||||| | ||||||| || || || ||||||||| Sbjct 27979 ATGACTCTGGCGTACAGGTCCGAGGCTTCACCTTTCCACCATGCCACGTCGGCTTTAAGG 28038 Query 23170 CGGCGCAAGCGCCGCTGTTTGAGTTTGCTCACCATGGCAGCCACCCAAGTTGCTGCAGGG 23229 ||||||| |||||||||||| ||||||||||||||||||||||||| | |||||| || | Sbjct 28039 CGGCGCAGGCGCCGCTGTTTAAGTTTGCTCACCATGGCAGCCACCCCATTTGCTGAAGTG 28098 Query 23230 CACCGATTGCCAGCAGCACGAACATAATCGCGTCGAATGGGTTAGGCATGGCG 23282 | ||||||||||||||||||||||| | | |||||||||||||||||||| || Sbjct 28099 CGCCGATTGCCAGCAGCACGAACATCACCACGTCGAATGGGTTAGGCATGTCG 28151 Score = 150 bits (166), Expect = 5e-32 Identities = 137/170 (81%), Gaps = 11/170 (6%) Strand=Plus/Minus Query 27663 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGCTGGTGAAGCGTC---TCTGGCT 27719 ||||||||||||||||||||||||||||||||||||| |||||| |||| || || Sbjct 23939 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGATGGTGAGTCGTCATGTCGTGCA 23880 Query 27720 GTCGTACACAACTGTCTTGCACATTCCGGCTACCCGCT----GGATCTGGATACTGAAAG 27775 | | | || | ||||||||||||||||||||||| |||| ||| || ||| Sbjct 23879 TACCGATAACACAGACTTGCACATTCCGGCTACCCGCTCAGGGGATAAGGAAAC--CAAG 23822 Query 27776 GAATCC--ACGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTTAC 27823 ||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 23821 GAACCCCGCCGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTCAC 23772 Score = 111 bits (122), Expect = 4e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 24797 TCCAGCTCAGCAATCCGCTTCTCTGCGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTT 24856 |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 29313 TCCAGCTCAGCAATCCTCTGGTCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTG 29372 Query 24857 GCGGGGTTGGCTGCGGCAATAAAT 24880 ||||| ||||||||||| ||| || Sbjct 29373 GCGGGTTTGGCTGCGGCGATATAT 29396 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24048 TCGGGCAACTTGTAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 24099 ||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 28689 TCGCGCAACTTGCAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 28740 >seq2281 Length=3184 Score = 149 bits (164), Expect = 2e-31 Identities = 109/123 (89%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 21482 ATTTAAAATCCCTCGGCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGGTACCATGGG 21541 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 639 ATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATGGG 698 Query 21542 AAA-ACTAGAATAAAATCAATG--ATAAGCAGTGTCGTATAAACCACCGAAAGGTGGTTT 21598 ||| | ||||||||||||| | |||||||||||||| |||||||| |||||||| Sbjct 699 AAAGATAAGAATAAAATCAAAGCAATAAGCAGTGTCGT-GAAACCACCTTCGGGTGGTTT 757 Query 21599 TTT 21601 ||| Sbjct 758 TTT 760 >seq447 Length=48793 Score = 132 bits (146), Expect = 1e-26 Identities = 339/506 (67%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 12194 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 12253 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || ||||| || Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12254 AAATAACGAGCTCTCGTTTGGTGGGTTCCCTGGCACGTCTTTGAT---CAGGAGCTGAT- 12309 | ||||| ||||| || || || ||||| | | ||| |||| | |||||||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12310 ATGCGGCAGAAAACCATTGATGCCATTATGGCGCATGCTGCAGCTGAATATCCTCGCGAG 12369 ||||| || | | ||||| || || ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12370 TGCTGCGGCGTGGTG-GCGCAGAAAAGC-CGTGTTGAACGTTATTTCCCGTGCCGCAATC 12427 |||||||| || || || | | || | | ||| || ||||||||||| || Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAA--GTACTTCCCGTGCCGGAACA 27717 Query 12428 TTGCCACGGAACCGGAGGACAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGG 12487 | |||||||| ||| | || | ||| || || || || ||||| || || |||| Sbjct 27718 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 27777 Query 12488 ACTGGGGCACGGTGATCGCCATCGCTCACAGTCACCCTGATGCCACGACACAGCCG--AG 12545 || |||| ||||||| || | |||| ||||| || ||||| | | |||| | Sbjct 27778 ACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCAC 27837 Query 12546 CGAACTGGATAAAGCGCAATGCGATGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCC 12605 || || || || ||||| || || || |||||||| ||| || ||||| Sbjct 27838 CGCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCC 27895 Query 12606 GGAGGGTGATTTACGCACCATCCAGCC-GCGTGGAGAACTGCCGTTGCTGGAGCGTCCGT 12664 ||||| ||||| || || ||| ||| || | || || ||| |||| |||| |||| Sbjct 27896 CGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGT 27954 Query 12665 TTGTGCTTGGACACTTCGACTGCTGG 12690 |||| | ||| || ||||||||| Sbjct 27955 TTGTACATGGCGCCTGGGACTGCTGG 27980 >seq83 Length=313169 Score = 84.2 bits (92), Expect = 6e-12 Identities = 119/165 (72%), Gaps = 8/165 (5%) Strand=Plus/Minus Query 17221 GGCCAGTATTACGCCGCAGGCATGGGGATCGGGGTGGAGAATACGCCATCAGGGATGCAG 17280 ||| ||| |||||||||||||| || | || || ||||| |||||| ||| ||||| Sbjct 4370 GGCAAGTTATACGCCGCAGGCATCGGTGTGGGCGTCGAGAACACGCCAGAAGGCATGCAA 4311 Query 17281 TCGCAGGTAATCTTCCTGGCCGACCGTTTTGCCGTTACATCCCAGGCTG----GCAGCAC 17336 |||||||| | |||||||||||||| || || || ||| || ||| | || Sbjct 4310 TCGCAGGTCCTTTTCCTGGCCGACCGCTTCGC--TTTCAT--CAATCTGATCAACGGCGT 4255 Query 17337 TGTGTCCTTGCCGTTCGTGATCCAGAACGGGCAGACATTTATCAA 17381 | ||| |||||| | ||||||| |||||||| || ||||| Sbjct 4254 CATATCCACGCCGTTTGCGATCCAGGGAGGGCAGACCTTCATCAA 4210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127955506491834