Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq846 2807 0.0 seq2798 284 3e-72 seq447 141 2e-29 seq4950 89.7 1e-13 >seq846 Length=12855 Score = 2807 bits (3112), Expect = 0.0 Identities = 1592/1616 (99%), Gaps = 0/1616 (0%) Strand=Plus/Plus Query 21412 GCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTTGTTGCAACGAA 21471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 GCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTTGTTGCAACGAA 181 Query 21472 CAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTCCCACTCCCTGC 21531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 CAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTCCCACTCCCTGC 241 Query 21532 CTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAGAAGATGTTGAG 21591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 CTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAGAAGATGTTGAG 301 Query 21592 CAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCGCAACTCGTGAA 21651 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 CAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCGCAACTCGTGAA 361 Query 21652 AGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTGCGCGCATAAAATACC 21711 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 362 AGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTCGTGCGCGCATAAAATACC 421 Query 21712 TTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAATTATGGTTTCTCCGC 21771 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 422 TTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATGCAATTATGGTTTCTCCGC 481 Query 21772 CAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATCCCGAGAGCATCAACAT 21831 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 CAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATATCCCGAGAGCATCAACAT 541 Query 21832 GCAATGTTGTAGGTATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGACATAAAGATAGC 21891 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 542 GCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGACATAAAGATATC 601 Query 21892 CATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGTTGCCCGGTAACAA 21951 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 602 CATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGCTGCCCGGTAACAA 661 Query 21952 CAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTGCTGCTTGATAAATTT 22011 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 662 CAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATTCTGCTGCTTGATAAATTT 721 Query 22012 TCAGGTATTCGTCAGCTGTAAGTCTTGATCTCCTTACCTCTGATTTTGCTGCGCGAGTGG 22071 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 722 TCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGCAGCGCGAGTGG 781 Query 22072 CAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTCGGAATGCATCGCTCA 22131 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 782 CTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCTCTCGGAATGCATCGCTCA 841 Query 22132 GTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGTCTATGTATCCATTGAGCA 22191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 GTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGTCTATGTATCCATTGAGCA 901 Query 22192 TTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAGACCCCTCCTTA 22251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 TTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAGACCCCTCCTTA 961 Query 22252 TTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCCTCTGCTGGCCA 22311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 TTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCCTCTGCTGGCCA 1021 Query 22312 GGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATTATCACTGTTGATTC 22371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 GGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATTATCACTGTTGATTC 1081 Query 22372 TCGCTGTCAGAGGCTTGTGTTTGTGCCCTGAAAATAACTCAATGTTGGCCTGTATAGCTT 22431 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1082 TCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGCCTGTATAGCTT 1141 Query 22432 CAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGTCCTTGGGTCCC 22491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1142 CAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGTCCTTGGGTCCC 1201 Query 22492 TGTAGCAGTAATATCCATTGTTTCTTATATAAAGATTAGGGGGTAAATCCCGGCGCTCAT 22551 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1202 TGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATCCCGGCGCTCAT 1261 Query 22552 GACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTACTGGTCGATTT 22611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 GACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTACTGGTCGATTT 1321 Query 22612 AAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCTTAACCGGAGGT 22671 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 AAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCTTAACCGGAGGA 1381 Query 22672 GGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTCTTGGGCGTCGC 22731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1382 GGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTCTTGGGCGTCGC 1441 Query 22732 TGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGCAATTACACGCA 22791 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 TGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGCAATTACACGCA 1501 Query 22792 AGAAAAAACCGCCATCAGGCGGTTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTT 22851 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1502 AGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTT 1561 Query 22852 ACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGTTGATGTCC 22911 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1562 ACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTGATGTTC 1621 Query 22912 TCTGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCACCTGTGACTCGGAAGTGC 22971 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1622 TCGGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAGTGC 1681 Query 22972 ATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAACCC 23027 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1682 ATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCC 1737 >seq2798 Length=1848 Score = 284 bits (314), Expect = 3e-72 Identities = 194/217 (89%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 21215 GTTTGATGACAAAAAATTAGCGCAAGAGGACAACAAA-TCACCTTGCGCTAATGCTCTGC 21273 || || ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct 1524 GTGTGTTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGT 1583 Query 21274 TACAGGTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTG 21333 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1584 TACAGGTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTG 1643 Query 21334 TCGCATTATGTAGTCTATTTTTTAGACTAAATATATTGTAATGCATTGATATTAATGGTT 21393 | |||||||| ||||||||||||||||| ||| ||| ||| | ||||||||||| ||| Sbjct 1644 TAGCATTATGCAGTCTATTTTTTAGACTGAATCAATTATAAGCCGTTGATATTAATTGTT 1703 Query 21394 TTTAATGTTTCACGTTCAGCTTTTTTATACTAAGTTG 21430 |||| ||||||| |||| |||||||||||||| ||| Sbjct 1704 TTTACCGTTTCACATTCAACTTTTTTATACTAACTTG 1740 >seq447 Length=48793 Score = 141 bits (156), Expect = 2e-29 Identities = 342/510 (67%), Gaps = 22/510 (4%) Strand=Plus/Plus Query 12633 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12692 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12693 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12748 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12749 ATGCGTCAGAAAACCGTCGATGAGATTATGGCGCATGCTGCAGCTGAATATCCTCGCGAG 12808 ||||| || | | | | | | ||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12809 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCGT-GTTGAACGTTATTTCCCGTGCCGGAATC 12866 || ||||| || || | | | | || | | ||| || |||||||||||||| Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 27717 Query 12867 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCGGAAGATTACGCAGCTGCTGAGG 12926 | ||| ||| |||| | || | ||| ||| || || || ||||| || || |||| Sbjct 27718 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 27777 Query 12927 ACTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAA------CGCAAC 12980 || ||| ||||||| || |||||| ||||| |||||||| | || || Sbjct 27778 ACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCAC 27837 Query 12981 CGAGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCACATCGTGAGCT 13040 || ||| ||| || ||||| || || || ||||||||||| || | Sbjct 27838 CGCACGACCTG------GCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGT 27891 Query 13041 GGCCTGAGGGGGATTTGCGCACCATCCAGCC-GCGTGGGGAACTGCCGCTGCTGGAGCGT 13099 |||| |||||||||||||| || ||| ||| || | | || ||| ||||| |||| Sbjct 27892 GGCCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGG 27950 Query 13100 CCGTTTGTGCTTGGCCACTTCGACTGCTGG 13129 |||||||| | |||| || ||||||||| Sbjct 27951 CCGTTTGTACATGGCGCCTGGGACTGCTGG 27980 Score = 93.3 bits (102), Expect = 1e-14 Identities = 195/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15737 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15796 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15797 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15856 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15857 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15916 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15917 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15976 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 15977 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTACC 16027 ||||||| | | || ||| ||||| || || || |||||||| || Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 32608 >seq4950 Length=777 Score = 89.7 bits (98), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39169 TGGTCAGCTAATCATTACCACAATAAAGCCATTGAATACAAAAAACAGCGCGACGAAAAC 39228 ||| | | ||||||||||| |||| |||||| |||||| ||||||||| |||| Sbjct 284 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 225 Query 39229 GCTATGGCATTAGATTCGGCTATGGCGACGATCTCTGATATGCAGAAGCGTCAACGTGAC 39288 || | | | | | ||| | ||| | || |||| ||||||| ||| || ||||| Sbjct 224 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 165 Query 39289 GTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 39347 || || | ||| |||| | ||| || |||||| | ||| |||| || || || || || Sbjct 164 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 106 Query 39348 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 39378 ||| |||| || |||| | ||||||||| Sbjct 105 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132559741790820