Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq35 210 9e-50 seq401 102 3e-17 seq172 102 3e-17 >seq35 Length=166930 Score = 210 bits (232), Expect = 9e-50 Identities = 249/333 (75%), Gaps = 7/333 (2%) Strand=Plus/Minus Query 9694 GCATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCC 9753 |||||||||| || ||||||||||| ||||| ||||| || ||| |||||||||| || Sbjct 116073 GCATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCC 116014 Query 9754 GCTATCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGT--TA 9811 |||| ||| ||| | |||||||| |||||| | |||| || ||| |||| | Sbjct 116013 GCTACAGCCCCGACGGGGCCGCAATCTGCAACATGTCCATCGCCACCACC--TCGTCCTG 115956 Query 9812 CAAGGACAAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTT 9871 |||||||| ||||||||||| |||| ||||| ||||||||||||| | | | Sbjct 115955 GAAGGACAAGGCCAGCGGCGAGAAGCGCGAAGAAACCGAATGGCACCGCGTCGTCATGTA 115896 Query 9872 CGGCCGCCTCGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGA 9931 |||||| ||||| |||| || ||| ||||| |||||| |||||||||||||| Sbjct 115895 TAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGA 115836 Query 9932 GGGGCGCATCAAAACGCGGAAGTGGCAGGATCA--AT-CCGGCCAGGATCGCTACACGAC 9988 || || | || || || |||||||| || | || ||||| |||||||||| || Sbjct 115835 AGGCCGTCTGAAGACCCGCAAGTGGCAAGACAAGGATACCGGCGCCGATCGCTACAGCAC 115776 Query 9989 CGAGATCGTCGCCGACAAGATGCAGATGCTCGG 10021 ||| |||||||| ||| ||||||||||||| || Sbjct 115775 CGAAATCGTCGCTGACCAGATGCAGATGCTGGG 115743 >seq401 Length=77198 Score = 102 bits (112), Expect = 3e-17 Identities = 214/311 (69%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 |||||||||||| || ||||||||||| ||| | |||||||||| |||||| ||| Sbjct 66639 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 66580 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAGGACAAAGC 9823 || |||| |||| | | ||||| ||| || || | ||| | | || || || Sbjct 66579 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 66520 Query 9824 CAGCGGCGACTTCA-AAGAAGTG-ACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTC 9881 | |||| | || || || | ||||||||||||||||| | ||||||||| || Sbjct 66519 GACCGGC--CAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATC 66462 Query 9882 GCCGAGATCGTCGACGAGCACCTGCG-CAAGGGCGCATCGGT-CTACATCGAGGGGCGCA 9939 ||||| |||| | ||| | ||||| ||||| || | || |||| |||| || Sbjct 66461 GCCGAAATCGCGGGTGAGTATCTGCGAAAAGGGAGC--CAGTGCTACGTCGAAGGCACTC 66404 Query 9940 TCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTCG 9999 || || || |||| ||| || ||| | | |||||||| ||||||||||||| Sbjct 66403 TCCGCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCG 66347 Query 10000 CCGACAAGATG 10010 |||| || || Sbjct 66346 TCGACCAGGTG 66336 >seq172 Length=24343 Score = 102 bits (112), Expect = 3e-17 Identities = 226/329 (69%), Gaps = 29/329 (9%) Strand=Plus/Minus Query 9706 TCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCCGA 9765 |||| ||||||||||| |||||||| ||||| ||||||||| || | ||| | Sbjct 1578 TCAATAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTA-CACCCAA 1520 Query 9766 G-CGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTA-CAAGGACAAAGC 9823 | |||| || ||| || |||| |||| || || ||| | ||| ||||||||| | Sbjct 1519 GGCGGCATGGCGATCACCCGCATCAGCCTGGCCACCACC-AGCGTCCGCAAGGACAAGGA 1461 Query 9824 CAGCGGCGACTTCAA-AGAAGTG-ACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTC 9881 ||| || || || || | ||||| ||||||||||| | ||||||||| ||| Sbjct 1460 T---GGCAAC--CAGCAGGAGCGTACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTC 1406 Query 9882 GCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATC 9941 | || |||| || ||| |||||||||||||| ||||||||| |||| || || | Sbjct 1405 GGTGAAATCGCCGGCGAATACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCT- 1347 Query 9942 AAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGC---------TACACGACCGAG 9992 ||| | | || | || |||||||||| || ||| | ||||| Sbjct 1346 -----GCGTTA-CGACAAGTACA--CCGGCCAGGACGGCGTGGAGAAGTACTCCACCGAC 1295 Query 9993 ATCGTCGCCGACAAGATGCAGATGCTCGG 10021 ||| |||||||| | ||||||||||| || Sbjct 1294 ATCATCGCCGACGAAATGCAGATGCTGGG 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201296261600511