Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq406 370 3e-98 seq257 187 7e-43 seq83 96.9 9e-16 seq447 86.0 2e-12 >seq406 Length=38937 Score = 370 bits (410), Expect = 3e-98 Identities = 527/736 (72%), Gaps = 13/736 (2%) Strand=Plus/Minus Query 769 TGGCAGGCTGACGCATTCAAGGAGATCCGCGATCACCTACGCAGT----GAAAACAGGTT 824 |||||||| ||||||||| ||||| ||||||||||| |||| | || || Sbjct 26061 TGGCAGGCAGACGCATTCCGCGAGATACGCGATCACCT--GCAGAACCCGGCGACGCGTC 26004 Query 825 TG-AGCCATTGCTGCTCGCCAGGGCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCA 883 |||| ||| |||| ||| | ||||| |||||||| |||||||| || || |||||| Sbjct 26003 ACCAGCCGTTGATGCTGGCCCGCGCATCCGGCCACGGCATCGGCAAGTCAGCTTTCATCT 25944 Query 884 GCATGCTCATCGACTGGGCAGAGAGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCA 943 ||||| || |||||| | || || ||| | || || ||||| |||| Sbjct 25943 CGATGCTGATTAACTGGGGCATGTCGACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCA 25884 Query 944 ACACCGAAACACAGCTGCGCACCAAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCA 1003 ||||||| | ||||||||||||||||| |||||||| || ||||||| || || Sbjct 25883 ACACCGACAACCAGCTGCGCACCAAGACATGGCCGGAAATCATCAAATGGT--CGAATCT 25826 Query 1004 GCCTGTTCTCGCAC---TGGTTCAAGACCACGGCCACATCGATCGTTTCCCTCGACCCCA 1060 | || | | || | ||||||| ||| ||||| |||| | ||||| Sbjct 25825 GGCTAT-CACGAAAGAGTGGTTCACCTGCACCGCCACGGCGATGTACAGCAATGACCCAG 25767 Query 1061 AACACTCCGCATCCTGGCGCGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCAT 1120 ||| | |||||| || ||||| | || ||||| || |||||| ||||| | Sbjct 25766 GCCACGACAAGCGCTGGCGAGCTGACGCAATACCGTGGTCTGAGCACAACACAGAGGCGT 25707 Query 1121 TCGCCGGCCTGCACAACGAGGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACA 1180 ||||||| |||||||||||| | ||||| |||||| || | |||||||| || || |||| Sbjct 25706 TCGCCGGGCTGCACAACGAGCGTAAGCGTATCATCGTGGTATTCGATGAAGCGTCCAACA 25647 Query 1181 TCAGCGACAAGGTGTGGGAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCA 1240 | || |||||||||||| ||||| ||||||||||| ||||| |||| || || | Sbjct 25646 TTGCAGATCTGGTGTGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTA 25587 Query 1241 TATGGGTGGCATTCGGCAACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCA 1300 | |||||||| || || ||||||||||| ||||| || || |||||||| |||||||||| Sbjct 25586 TCTGGGTGGCGTTTGGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCA 25527 Query 1301 AGTTCAAGCACCGGTGGAAGTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACA 1360 ||| ||||||||| ||||||||| |||||| || | | || || |||||||| |||| Sbjct 25526 AGTACAAGCACCGCTGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGCACAAACA 25467 Query 1361 AGACCCAGCACCAGAAGTGGATTGATGACTGGGGTGAAGATTCCGACTTCGTCCGCGTCC 1420 || |||| ||||| ||| |||| |||| || ||||| ||||||||| |||| Sbjct 25466 AGCAGCAGCTGCAGAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCC 25407 Query 1421 GTGTGCGCGGCATGTTCCCGAGGGCTTCCGCATTGCAGCTGATACCAACTGACTGGGTGG 1480 | ||||| || || ||||| || || | | | ||| | || ||||| | | | Sbjct 25406 GCGTGCGGGGGATCTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAG 25347 Query 1481 CCGAGGCCATGAAGCG 1496 ||||||||||||||| Sbjct 25346 ACGAGGCCATGAAGCG 25331 Score = 95.1 bits (104), Expect = 3e-15 Identities = 176/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 6144 AACGTGATCGACGCTGGCGGTACCGGCACCGACAACTCGTCCATCTGGCTGATCGGCTGG 6203 ||| | ||||||||||||||||||||||| || ||| | || ||||||||| | | ||| Sbjct 20081 AACATTATCGACGCTGGCGGTACCGGCACTGATAACACCTCTATCTGGCTGGTGGTATGG 20022 Query 6204 GGCGCCAACACCATCCACGGCATCTACCCGAAAGGCTCGCAGGCAGGCCT---GATCCAC 6260 || | |||||| | || ||||||| ||||||||| | | || ||||| || || Sbjct 20021 GGTGAAAACACCGTTCATGGCATCTTCCCGAAAGGGCAGAAAGCTGGCCTACAGACTCAG 19962 Query 6261 AACGACCTAGGCGAGATTGACGCGTTCGATGCCAG-CATG--AACCGCTTCCGCGCCTAC 6317 | |||| || ||| | | |||||||||| || || | || | ||| Sbjct 19961 A---ACCTTGGTGAGCAAACCCTGGTCGATGCCAGTGGTGGTAA---ATACCAGGGCTAT 19908 Query 6318 GGCGACCAGTACCAATGGAAGGCCGGTATTGCCGTGCACGACTGGCGCTACGCCGTTCGT 6377 | ||| ||| ||||| | |||| | || ||| ||||||||||||| || || Sbjct 19907 CGTACCCATTACAAATGGGATAACGGTCTGGCACTGCGTGACTGGCGCTACGTTGTGCGC 19848 Query 6378 ATCGCAAACATCGA 6391 ||||| |||||||| Sbjct 19847 ATCGCCAACATCGA 19834 >seq257 Length=84698 Score = 187 bits (206), Expect = 7e-43 Identities = 316/451 (70%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 31512 GGTGGTGATGTTCAGCAGGGCGCACATGACGTAGCGCTTGCCGTAGCTGGTGGTCGAGCC 31571 ||| |||||||||||||| || ||||| |||||||||||||| ||| | || | ||||| Sbjct 78482 GGTCGTGATGTTCAGCAGCGCACACATCACGTAGCGCTTGCCATAGGTAGTCGATGAGCC 78541 Query 31572 GACGGCCTGGACGGCGTTCTTGCTGCCGCT---GGTGTCGAGCGGGAGAAGCATGGTTGT 31628 || ||||| ||| |||| || || | | | || | ||| || |||||| || Sbjct 78542 AACAGCCTGTACGTCGTT---GCGACCTTTTCCGATATCAATCGGCAGGCTCATGGTGGT 78598 Query 31629 CTCTTCCCGGTGGCCGGCGCGGTGCATCAGGATGCCAGTCACGCTAAGCCCGGCCTGGGC 31688 | || |||||||| | |||||||||| ||| ||||| || || | | | | || Sbjct 78599 TTGCTCGCGGTGGCCACCCCGGTGCATCAAGATTCCAGTGACACTGATCGCCTTTTCAGC 78658 Query 31689 GTGCTCGACCTTGAAGCTGATGGCGAACCCGTGGGCCTTCATGATCGGCTTCACCACGTC 31748 || || ||||||||| ||||||| |||||||| || |||||||||||||| || Sbjct 78659 GTTTTCCACCTTGAAGGTGATGGCAAACCCGTGCTGCTGCATGATCGGCTTCAAGGTGTG 78718 Query 31749 GCTGATGTCTTCAAGAGTTGCGTAACGGATGGTGCC---GTGACCCTT---GGCGCGCTC 31802 |||||| || || || ||||| ||| | | || ||| || ||| | || Sbjct 78719 TGTGATGTGGTCGAGCGTGGCGTA--GGA-GTTTCCTGTGTGTAGGTTAACGGCACCTTC 78775 Query 31803 TGCGATGGTTGGGATCTCGCACTGCATTTCGGCCATGGCGGCGTTGAACTGTTCTTGGGC 31862 | || ||||| | |||||||||||||||||| ||||| ||||| || | || Sbjct 78776 GAACACAGTCGGGATGTTGCACTGCATTTCGGCCATTGCGGCATTGAAAGCTTGCTCAGC 78835 Query 31863 --GCTGCGAGCCTGCATGCGCTCGTGCATCTGCATCAGGCGCTCGATCTTGTCGATATCG 31920 || || |||||||||||||||||| || ||||||||| ||||| ||||| ||| Sbjct 78836 TTCCTTGGA--CTGCATGCGCTCGTGCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCG 78893 Query 31921 ACGCTCGGGTCGCTGGCGGCCTTGCTGATGA 31951 | | || ||| ||| || |||||||| Sbjct 78894 CAGGTTGGATCGGCGGCAGCACGGCTGATGA 78924 >seq83 Length=313169 Score = 96.9 bits (106), Expect = 9e-16 Identities = 387/598 (65%), Gaps = 46/598 (8%) Strand=Plus/Minus Query 37292 CGCGTATCTGCTGCCTGGGGGGAAACGGCAAGGTTCGGAGTGGAAGTGCGGGAACGTGAG 37351 |||||||||| |||| || || || || || ||| |||||| ||| |||||| Sbjct 29233 CGCGTATCTGTTGCCCGGCGGCAAGAAACACGGACGGGAATGGAAGATCGGCAACGTGTC 29174 Query 37352 TGGTGACGCCGGGGATAGCCTTGGCGTTTGCCTGAAGGGTGAGAAGGCCGGGGTGTGGTC 37411 || || || || ||| || |||| || | | || | ||||| || || ||||| Sbjct 29173 GGGCGATGCTGGCGATTCGCTGTCCGTTAGCATCAGCGGCGCAAAGGCGGGAGTCTGGTC 29114 Query 37412 TGACTTCGCCGCAGG-ATCAAGCGGTGATCTGCTGGACTTGTGGTGCGCTGCTCGGCGGT 37470 || ||| | ||||| ||| |||| || ||| ||||||||||| || | ||||| | Sbjct 29113 CGATTTCTCGGCAGGCATCG-GCGGCGACCTGTTGGACTTGTGGATGGCGGTGCGGCGTT 29055 Query 37471 GCGACATGAAGACAGCCATGCAGGAAGCCAAGGATTACTTGGGCGTGATCGAGCCAAGGC 37530 | ||| || || |||| |||||||||| | ||| |||||||| || | | | || Sbjct 29054 GTGACCTGCCCGAGGCAATGCGGGAAGCCAAGCAATACCTGGGCGTG--CGCGACGACGC 28997 Query 37531 TATCGGCG---CCGGCCAAG---AAGGTTTACAGCCGGCCAGATAAGCCGAAGTGCAAGA 37584 | || | ||| ||||| || |||| || || | ||||| | ||| | Sbjct 28996 T-CCGCTGAAACCGCCCAAGCGCGAGCCGTACAAACGCCCGGCCAAGCCCCAATGCCGGG 28938 Query 37585 CGCCAGTTCAGGACAGTCCTGTG-ATG-GCCTACTTGAAGGGTCGAGGCCTGACGGAAGA 37642 |||| || ||||| ||| | | | | |||| ||| || ||| |||| || || Sbjct 28937 CGCC-------GA-AGTCCCGTGTACGAGAGTGGTTGACGGGCCGCGGCTTGACCGAGGA 28886 Query 37643 AACGATCAAGGCGTTCAAGATTGGTGAGCA------GGGCCGTAATATC------CTCTT 37690 ||| ||| ||| |||||||| || ||||| ||| || || |||| Sbjct 28885 AACCATCGCGGCATTCAAGATCGGCGAGCAAGAGCGAGGCGACAAGGTCTACGCGATCTT 28826 Query 37691 CCCCTTCCTGCGCGATGGCCAGCTGATCCACTGGAAGACGCTGGGCGTAGATCGCCAGGA 37750 |||| ||||||||| ||| ||||| || || ||| | | || || ||| Sbjct 28825 TCCCTACCTGCGCGACGGCGAGCTGGTCAACACGAAATCCC---GC------AACCCGGA 28775 Query 37751 CGGCAAGAAGAAGATCATGGCTGCCAAGGATTCCGAGCCGTGCCTGTTCGGCTGGCAGGC 37810 || |||||| | || || ||| || ||||||| ||| ||||||||||||| Sbjct 28774 CGAGAAGAAGGACATGCTGCAAGCCGGGGGCGCCGAGCCCTGCTTGTTCGGCTGGCACCT 28715 Query 37811 GATTCCGAGC--GATGCGCGTGAGGTGACCATCACCGAAGGCGAGATTGACGCCATGA 37866 || ||| | | ||||| ||| |||| ||| |||||||| ||||| |||| Sbjct 28714 CAT--CGACCCGAACGCGCGGATGGTCGCCATTTTCGAGGGCGAGATCGACGCGATGA 28659 >seq447 Length=48793 Score = 86.0 bits (94), Expect = 2e-12 Identities = 201/296 (68%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 30253 GCCCTCCCCATCTATCAGGTTGCGTCCACTTCACGCCGCACTCAGCGCCATACGCCGTG- 30311 |||||||||| | || ||||||||| ||| ||| ||||| | || ||| Sbjct 8069 GCCCTCCCCAGTTGTCCTTTTGCGTCCAGCGCACCTGATGCTCGGCGCCGAAGGC-GTGC 8011 Query 30312 ATCCATTCAATGAGACTGGCACATCGCTTCTTGCTCAGTTTGCTGGTCTGCGTGTAGAGG 30371 | |||||| || || | | || |||| | | || |||||||| || ||||| | Sbjct 8010 ACCCATTCGATCAGCTCGCCGCACTGCTTTACGGTGAGCTTGCTGGTGCGCTCGTAGATG 7951 Query 30372 ACATCGATTCCCTGACCGTCGATGGCCGGGATCATGTGCGGATTCTTGCCTTCCTCCCGT 30431 || |||| || | ||||| | || |||||||| ||||| || | ||| ||| || Sbjct 7950 ACGTCGAAACCGTTGCCGTCTACCGCAGGGATCATCTGCGGCTTGTCGCCCGACTCACGC 7891 Query 30432 AGCCACGCGGCTACACAG-AGGCGCTTCCAGACCGATGCCGACCATTTCTGCCCGGCGTG 30490 ||||| ||||| ||| ||||||||||||| | | ||| |||| ||||||||| Sbjct 7890 AGCCAGGCGGCCGT-CAGCAGGCGCTTCCAGATCAGGACATCCCACTTCTTCCCGGCGTG 7832 Query 30491 GTCCACTTGCTCGGCGAGATC--CTTGAGCATGGCGTGGAGCTTCTTGTTCTGCTC 30544 || || || |||||| ||| | |||| || || || |||||||||||| Sbjct 7831 CTCGACCTGGGCGGCGATATCGGCCAGAGC--CGCATGCAGGGCCTTGTTCTGCTC 7778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136466462638674