Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq250 176 7e-39 seq5011 120 5e-22 seq329 118 2e-21 seq1432 89.7 8e-13 seq120 89.7 8e-13 seq878 86.0 1e-11 seq192 86.0 1e-11 >seq250 Length=59172 Score = 176 bits (194), Expect = 7e-39 Identities = 217/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGA 122421 |||||| | || |||||| | |||| |||| | || ||||| |||||| | || Sbjct 46961 CATGAAGCCCTACCTGGACCTGCTGCAGCACGTGCTGGAGAACGGCACCGAAAAGTCCGA 46902 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 ||| || ||||| ||||| | | |||||| || |||||||| ||||| | Sbjct 46901 CCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCAACCTGGGCGA 46842 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 || |||||||||||||| ||||| ||| | ||||| || || |||||||||||||| || Sbjct 46841 CGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGGTCGATCATCCATGAGCTGCT 46782 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||||||| | |||||| ||||||||| || || | |||||| | || | ||||| Sbjct 46781 GTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTCACCGACAACCAGGTGCGCATCTG 46722 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||| || ||||| |||| | || | || || ||| | ||||| ||||||||||| Sbjct 46721 GGACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGGCG 46665 Score = 93.3 bits (102), Expect = 7e-14 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 123076 CTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCCTC 123135 ||| ||| |||| |||||||| | ||||| ||||| ||||| ||||| ||||| ||| Sbjct 46481 CTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAG 46422 Query 123136 TTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATA---TGGCAGTAGGTGACTT 123192 ||||| || || | |||||| | || |||||||| ||| || || ||||| Sbjct 46421 CTACGCACTGCTCACCCACATGGTGGC---GCAGGCCACCGGGCTGGGCGTGGGCGACTT 46365 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGC 123243 |||| || || || | ||||||||||||||||||| | || ||||| Sbjct 46364 CGTGCATACCCTGGGCGACGCGCATCTGTACTCCAACCACGTTGACCAGGC 46314 >seq5011 Length=2423 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| || || ||||| | || | |||||| || ||||| || || ||| Sbjct 953 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 894 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 ||||| || | |||||||| || | || ||| ||||||||||| ||||| Sbjct 893 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 834 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | ||||| || |||||| ||||| || || ||| ||| | ||| Sbjct 833 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 774 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||||||||| || || | || ||||||| ||||| || || | || ||||| Sbjct 773 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 715 >seq329 Length=161735 Score = 118 bits (130), Expect = 2e-21 Identities = 212/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-GA 122421 ||||||||||| | || ||| ||| ||| | ||| | ||| || ||||||| || Sbjct 13090 ATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCA-GGGAACACAAAAGCACGA 13148 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 | | ||||| || |||||| | | || ||| || ||| | || |||| || | Sbjct 13149 CAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGA 13208 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||| || || |||||||| |||||||| |||| | ||||| ||||| || || | Sbjct 13209 AGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGAT 13268 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||| | | || || ||||| || || ||||||| ||||| || | ||||| Sbjct 13269 CTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTG 13328 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGA 122661 |||||| ||||| |||||| | ||| | || ||||| || || || ||||||||| Sbjct 13329 GGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTC 13388 Query 122662 GTGGCCA 122668 |||||| Sbjct 13389 ATGGCCA 13395 >seq1432 Length=12607 Score = 89.7 bits (98), Expect = 8e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 123074 TCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCC 123133 || |||||||||||||||||||| || ||||||||||| || || ||||| ||||| ||| Sbjct 8831 TCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATCGCC 8890 Query 123134 TCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGG 123170 || ||||| | |||| ||| | |||||||||| Sbjct 8891 TCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGG 8927 Score = 86.0 bits (94), Expect = 1e-11 Identities = 195/291 (67%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 122378 GACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAG-CAGACCGTACGGGCACGGG 122436 ||| | || || ||||| | || | ||| |||| | ||| | || || || || ||||| Sbjct 8369 GACCTGCTCCGCGACGTCCTGGAGACCGG-CACGCATAAGTCCGATCGCACCGGGACGGG 8427 Query 122437 CACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAAAGGTTTCCCGCTGGT 122496 || | | ||||| || || ||||| || ||| || || ||||| || | Sbjct 8428 GACGACGAGCGTCTTCGGGCGTCAGATCCGCTTCGATCTGTCGAAGGGCTTCCCCCTCAT 8487 Query 122497 CACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGG 122556 ||| ||||| || ||| || |||||| | ||||| || |||||||| ||| Sbjct 8488 CACCACCAAGCGCGTGCACTTCAAATCCATCGCGTACGAGCTCCTCTGGTTCCTGCAGGG 8547 Query 122557 CGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAATGGGCAGA 122616 ||| ||||| || || || || ||| |||| |||||||| || ||||| || Sbjct 8548 TGATTCCAACGTCGGGTGGCTCCGCGAGAACGGGGTCACGATCTGGGACGAGTGGGCCGA 8607 Query 122617 TGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGAGTGGCC 122667 |||| || | ||||||||||| ||||| ||| |||||| |||||| Sbjct 8608 TGAATCCGGCGACCTCGGCCCGGTCTACGGGGTGCAGTGGCGTTCGTGGCC 8658 >seq120 Length=487886 Score = 89.7 bits (98), Expect = 8e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 110297 GTAGTTCAGCTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 110355 Query 169793 TCAGTCCTGCCATTTTTAA 169811 || | | || | |||||| Sbjct 110356 TCCGGTCCGCAAGTTTTAA 110374 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 108181 GTAGTTCAGCTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 108239 Query 169793 TC 169794 || Sbjct 108240 TC 108241 >seq878 Length=51136 Score = 86.0 bits (94), Expect = 1e-11 Identities = 198/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-G 122420 |||||| |||||||| || ||||| || || |||||| | ||| || ||| | Sbjct 39651 CATGAAGCAATATCTCGAACTACTGAACGATGT-CGTGACCAATGGCCTGACCAAGGGCG 39593 Query 122421 ACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 |||| || ||||| |||||| | | | || | | || | || | | || Sbjct 39592 ACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCCG 39533 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 | || ||||||||| | || ||||| ||| ||||| || |||| | |||| | Sbjct 39532 ACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTGA 39473 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | ||| | | | ||| | ||||||||| ||| ||||| || || ||| |||||| Sbjct 39472 TCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATCT 39413 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 |||| |||||||| ||||| || | || |||||||||||||| |||| ||| Sbjct 39412 GGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 39357 >seq192 Length=23826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 167016 TAGTATTCTAGGGGCATAGCTCAGCTGGCAGAGCACCGGTCTCCAAAACCGGGTGTCCAA 167075 |||| || ||||||||||||||| ||||||||| ||||||||||||||| || | Sbjct 23471 TAGTGTTTTAGGGGCATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGTTGTA 23412 Query 167076 GGTTCGAATCCTTGTGCCCCTGCCA 167100 ||||||| |||| ||||||||||| Sbjct 23411 GGTTCGATTCCTACTGCCCCTGCCA 23387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777531617429200