Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq406 286 9e-73 seq447 187 6e-43 seq83 131 4e-26 seq270 109 1e-19 seq4950 102 2e-17 seq40 87.8 4e-13 >seq406 Length=38937 Score = 286 bits (316), Expect = 9e-73 Identities = 356/488 (73%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 22207 ATAGCGGGCCCGTCTGTCGTCCAGCCCGTTCTGCCCACCGTTAATAATCTGCGTGACGCG 22266 ||| || || || | |||||| | |||||||||||||| || || |||||||||||||| Sbjct 752 ATACCGCGCACGCCGGTCGTCGATGCCGTTCTGCCCACCATTGATGATCTGCGTGACGCG 811 Query 22267 CAGCAAATCGCCCGGATATTTCAGGCAGCCTTTGCTGGTATAGAACCATGCTGCAGATCG 22326 || || ||||| | || |||| |||||||||| | | ||||||| || || || Sbjct 812 CACCAGGTCGCCGGTGTACTTCATGCAGCCTTTGGTTGCGAAGAACCACGCCGCGCTGCG 871 Query 22327 CGCTGCGGTGGCGTCTTTGGAAAGCAGTTCCGGCGAGCTCACAAGGTCAAGTTTCAGCGC 22386 || ||| |||| | | ||||| || ||| | || || || | ||||| | Sbjct 872 GGCCGCGTATTCGTCCTGCGCCAGCAGCTCAGGCTGCTTAACCAGATCCACCTTCAGGCC 931 Query 22387 GGCGCCGCAATCGCGGTAATTCTCGAGCCCGGTGATCTGGATGAGCCCGCGTCCGCGATA 22446 |||||| ||||| || || | ||||||||||||||||| |||||||| ||| | || Sbjct 932 ATTGCCGCAGTCGCGATAGTTGTTCAGCCCGGTGATCTGGATAAGCCCGCGCCCGAGGTA 991 Query 22447 TTTCCAGCCATCACCCGGGGCGTTATTACCGAGGCGCTTGCTGTAAACCAGATTGGCGAT 22506 |||||| ||| ||| |||| || || | | |||||||| ||||| |||||||| Sbjct 992 AAACCAGCCGTCAGTCGGACCGTTGTTCCCCATTCTTTTGCTGTACACCAGGTTGGCGAT 1051 Query 22507 CGCGCGCTGGCGTTCAAGGGGCAGCACCTTTTCATACGTGCGGCGGCCCAGCGTGTTGGC 22566 ||| |||||||| || || || | | |||| | || |||||||||| ||| || Sbjct 1052 CGCACGCTGGCGCTCCAGCGGTAACGATGGTTCACCAGCACGACGGCCCAGCGCGTTAGC 1111 Query 22567 CTGATCCTGAGTTAACCGGCCAGCCCGGACAAAATCATTAAGCGCTGCGATGCTGTAGTT 22626 |||| ||||||||| || || | ||||| ||| | ||| |||| | ||||||||| Sbjct 1112 CTGACCCTGAGTTAGGCGCCCGGTACGGACGAAACCTGCCAGCCCTGCTACGCTGTAGTT 1171 Query 22627 GAAGCTCTCTTCCAGCCTGGTAAAGCCGGTGCTTTCATGGCCGACCTGCGCGATGAACAT 22686 |||| | || | ||||| |||||||||||| ||||| |||||||||||||| ||||| Sbjct 1172 GAAGTTTTCCTGCAGCCGGGTAAAGCCGGTAGACTCATGCCCGACCTGCGCGATAAACAT 1231 Query 22687 TGCCTGGT 22694 ||||||| Sbjct 1232 CGCCTGGT 1239 >seq447 Length=48793 Score = 187 bits (206), Expect = 6e-43 Identities = 545/827 (66%), Gaps = 22/827 (3%) Strand=Plus/Minus Query 3153 GTGACGCGGTACTGCTGGATTGCCACATCCTGCGCATCCACCGACCAGACCGCCTCGCGC 3212 || || |||||| | |||| |||| || | || || | || ||| ||| || ||| Sbjct 32752 GTCACCCGGTACAGTGGGATGGCCAGGTCGTCAGCGTCGAGCGCCCACACCAGTTCACGC 32693 Query 3213 TCCGGCGTTTCGCTGAATACCGCAGATACCGTGACGTTTCGGCCGCTGACCGCCTGAAGG 3272 || |||| || | | ||| | |||||||| | |||||||||||| || | | Sbjct 32692 TCAGGCGGCACGGAGTACGCCGTGGTGACCGTGACCTGGCGGCCGCTGACCAGTTGCACG 32633 Query 3273 GTACGGGCCTGTGATTTGCCGGACGGCAGGTTGACGATAAGCCTGTCGCCCGCTTTTGCA 3332 || || ||| | |||||| |||||||||| ||| |||| ||| || | ||| || Sbjct 32632 GTGCGCCCCTCGCACTTGCCGTCGGGCAGGTTGAGGATCAGCCGGTCACCGGGTTTGGCC 32573 Query 3333 TCCGGCGCCCGGTCGAGCGTCAGCGCGCGACCGTTCAC--CTGACTGATACGCCCGCCCA 3390 | | | ||||| || || | | ||||| || |||| ||| ||||| |||| Sbjct 32572 TGGGTGTCGCGGTCCAGGGTGATGACTTTGCCGTTTACGGCTGA--GATGCGCCCACCCA 32515 Query 3391 TCACCCGCCCCGACAGATACTGATCCGCCACGCCGATGATATGGCCCGGCAGCGGGATCA 3450 ||| || | ||| | || || | | || | ||| ||||| ||||| Sbjct 32514 CGGGCCGACCGGCCAGCAGTTCGTCAGCGATCGGAACGACGTAGCCAGGCAGAGGGATAC 32455 Query 3451 TGCCTTCCAGCCCAGTGGTGAAAC-TCACCATCCGGTCTTTAGCATTTGTCAGCAGCGCC 3509 || ||||| || | ||||| | ||| |||||| || | || || |||| |||| Sbjct 32454 GTCCGTCCAGGCC-GACACGAAACGTTACCGCCCGGTCCTTGGAGTTGGTGAGCAACGCC 32396 Query 3510 CAGCGGCCGCGGCGGTTGGCCTCGGTACGC-CGCGTGCAGCCGATGGCGGATATCTGCGT 3568 || ||||||||| | ||||| | || | |||||||||||||| ||| |||| | Sbjct 32395 CACTTGCCGCGGCGCTGCGCCTCAG-ACTCACGCGTGCAGCCGATCGCGCTGATCTCCAG 32337 Query 3569 CTGGCGCACGCCGTAGCGCCGCACCAGATCAGGCTCCATCACCGCTTCCACTTCATCGGT 3628 | || |||||||||||||| ||| | | || |||| || || || | Sbjct 32336 CGGGTTATCGCCGTAGCGCCGCTGCAGCTTCTGATCGGTCACGGCCGTGACGTCGGTGTC 32277 Query 3629 GTAATGGTTCTCCGGGTTTGACCAGCTCACCATCGCCGTTGAATAACGGTTCTTCTC-GC 3687 ||| | |||| |||||| |||| |||| |||| ||||| || | ||| | Sbjct 32276 GTAGTTGTTCAGCGGGTTGTCGTAGCTGACCAGCGCCCGGGAATAGCGTGTGCGCTCCGA 32217 Query 3688 TGCCGCTGGCGTAGGAGAATTTGCCGTCAATAACGTTGGCGCGGGTGTAGACATAC---- 3743 ||| ||| | |||| ||| ||||| || || ||||| || ||||||||| | | Sbjct 32216 TGC-GCTCGAATAGGTGAACTTGCCATCGATGACGTTCGCCCGGGTGTAGGCGAAGTCGA 32158 Query 3744 -GTCA-TATCGCGCGGCATATCCGCCAGCGCGGCCAGCTGATTACCGGCCCAGTATGTCA 3801 |||| | ||||||||||||||| ||| | | | || |||||| || |||| Sbjct 32157 AGTCAGTGGCGCGCGGCATATCCGACAGGGTGAAGACTTGGCCCTGGGCCCAATAGGTCA 32098 Query 3802 TGCCGCGGAAGATGCTCGCCAGGTCGCGCAGCACCGTAAACGCCTCGTTCTGGCTCTGGA 3861 |||| ||| | || ||| | ||||||||||| || | || || || |||||| | Sbjct 32097 TGCCTCGGTAAATCGTCGAGATGTCGCGCAGCAGCGACCATGCATCCGCCTTGCTCTGCA 32038 Query 3862 TATACACGTCGCAGAGAAAACGTGGCTCAGTACCGCTGCCGCCGGTACCGTCCGGCACGG 3921 | || ||||||| ||||| || || | | ||| || | |||| |||||| Sbjct 32037 AGTTCAGATCGCAGATGAAACGCGGTTC----CTG--GCCACCCTTCCCGTTCGGCACCA 31984 Query 3922 GCTGATCGCAGTGCTGCGCGATGCGGTAGAGTTCCCACTTGTCCACC 3968 ||||||||||| ||||| |||||||| || ||||||||||| ||| Sbjct 31983 TCTGATCGCAGTACTGCGAAATGCGGTACAGCTCCCACTTGTCGACC 31937 >seq83 Length=313169 Score = 131 bits (144), Expect = 4e-26 Identities = 319/475 (67%), Gaps = 34/475 (7%) Strand=Plus/Plus Query 5917 GCCACGAC-ACGATTACCCAGGGGATGCCGTGAGCATCGCACTGCAGTTGGTCAAGCTCG 5975 |||||| | ||||| | |||||| | ||| || ||||| | | ||| |||| Sbjct 8211 GCCACGGCCACGATGAACCAGGGAAGGCCCGTCGCCTCGCAGGCAACTCTGTCCGCCTCG 8270 Query 5976 CTCGGCTGGGTGGTGGCGCCGTCGCCAGGGTGGGAATGCACAATGGCAGTAACGGT---G 6032 |||||| | |||| | ||| | || ||||||||||||||||| ||| | | Sbjct 8271 CTCGGC-----GCAGGCGTC-TCGTCCGGATGGGAATGCACAATGGCT---ACGATTCGG 8321 Query 6033 CCCCAGTCTTCCGCGGCCGCGTAATCTTCCGGCGACAGCTCAAACTGTTCTTCCGGCGC- 6091 ||| ||| || || || ||||| || || | | ||| | || || || ||||| Sbjct 8322 CCCGTGTCCTCGGCCGCGGCGTAGTCGTCGGCAGCGAGCACGAAATGGTC----GGCGCT 8377 Query 6092 ----GCCGGTGATATTCCGGCACGGGAAATAC--CGCTCGACGCGGCTTTTTTGTGCCAC 6145 |||| | |||| |||||| | |||| | |||| |||| | | |||| Sbjct 8378 GGTTGCCG----TGTTCCTGCACGGTACATACACCTCTCGGCGCGCCACCATGA--CCAC 8431 Query 6146 CACGCCGCAGCACTCGCGCGGGTATTCTGCCGCAGCATGCGTCAGAATGTCGGCAATGGT 6205 || |||||||||||||||||||| || ||| | ||||||| | ||| | | || || Sbjct 8432 CAGCCCGCAGCACTCGCGCGGGTACTCGGCCACCGCATGCGCGCGGATGGCCTCCATCGT 8491 Query 6206 TTTATCGCGCATGGTTACCTCCGGATCAGGCTGGCGCCGGGAAAGCCGCCGAAATCGA-- 6263 || | ||||||||| ||| | ||||||| ||| |||||| || ||||| | || Sbjct 8492 CTTTTTGCGCATGGTCACCCTCTGATCAGGTCGGCAGAGGGAAACCCTCCGAAGTTGATT 8551 Query 6264 GCCGGGCATCCGAACCAAAGCGTTTTTTACAGTCGGTCAGCAGGCCCGAGCATTTATCCT 6323 || | | || || || || || || ||||| | || ||||||||||| ||| Sbjct 8552 ACCTCGTACTCG--CCGAATCGCTTCTTGCAGTCCGACATGAGGCCCGAGCAGCGATCGC 8609 Query 6324 GTGCCGGGTCGGTCACCGGGTTACCTTTCAGATCAAACATGCGCGGGCCGTTGTA 6378 | |||||||| || |||||||| || || || ||||||||| |||| |||| Sbjct 8610 GCGCCGGGTCCGTGACCGGGTTCCCGGCTAGGTCGAACATGCGCCCGCCGGTGTA 8664 Score = 109 bits (120), Expect = 1e-19 Identities = 257/381 (67%), Gaps = 14/381 (4%) Strand=Plus/Plus Query 3750 TCGCGCGGCATATCCGCCAGCGCGGCCAGCTGATTACCGGCCCAGTATGTCATGCCGCGG 3809 |||| |||||| ||||||| ||| || | | | |||||||| | |||||| || Sbjct 5953 TCGCCCGGCATGTCCGCCACGGCGATCACCGAAGAATTCGCCCAGTACGCCATGCCTCGA 6012 Query 3810 AAGATGCTCGCCAGGTCGCGCAGCACCGTAAACGCCTCGTTCTGGC-TCTGGATATACAC 3868 || | | |||||| || | | || |||| ||| | | | |||| | || || Sbjct 6013 AACACGGACGCCAGATCCTGAACGACGCGGTACGCGTCGG-CAGTCGTCTGCAGGTAGAC 6071 Query 3869 GTCGCAGAGAAAACGTGGCTCAGTACCGCTGCCGCCGGTACCGTCCGGCACGGGCTGATC 3928 | |||| ||| || ||||| | |||| | ||| | ||||| || || | || Sbjct 6072 ATTGCAGGTAAACCGCGGCTCCTTTCCGCCGAAGCC---ATCGTCC---ACCGGTTCGTC 6125 Query 3929 GCAGTGCTGCGCGATGCGGTAGAGTTCCCACTTGTCCA-CCTGC--GTCGCATCCAGCCG 3985 ||||| || |||| |||| || |||||||||||| || || | || | || || Sbjct 6126 GCAGTAGCGCCCGATCTGGTACAGGCCCCACTTGTCCAGCCAGCCGGCCGGAACCCGC-- 6183 Query 3986 GTCTCCGATCCCGAAACGGTCACTTAGCACCAGGTCGTAAAACACCCATGCGGGATTATT 4045 || || | ||| | ||||| | |||||||||| |||||||||| || ||||||| Sbjct 6184 -TCGCCCAGGCCGTAGCGGTCGTTCCCCACCAGGTCGAAAAACACCCAGGCAGGATTATC 6242 Query 4046 GCTCCAGGCCCATTTAAACGAGCCGTCCCAGGTGCCGGAATAGGTGCGCGCCACCGGATC 4105 | |||| ||| || |||| |||||||||||||||| ||| || | | |||| || Sbjct 6243 GGTCCACGCCGTCTTGAACGTGCCGTCCCAGGTGCCGATATACACCCGAGTCTCCGGGTC 6302 Query 4106 GTATGTCGTGGGCACGCGGAT 4126 || | | ||||||||||| Sbjct 6303 ATAGTTGCTCGGCACGCGGAT 6323 >seq270 Length=2036 Score = 109 bits (120), Expect = 1e-19 Identities = 218/315 (69%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 36848 CCGGCAGAACTGATGCTCGCCGCGGAGCTTTTCCGCCGCGCGCGCTGCATAGCTGCAGAT 36907 |||||| ||||| |||| || || || || || || || ||| ||||||| ||| | | Sbjct 84 CCGGCAATACTGACGCTCCCCACGTAGTTTCTCTGCGGCCCGCTCTGCATA-CTGAACAA 142 Query 36908 -AGCCTGGCGCATCGCTTCATAGTCAGTGATTCGCTCCCCGAATGACCGGCTGCAGACGA 36966 ||||||| |||| || || | ||| |||||||| || || || || || ||||| | Sbjct 143 CAGCCTGGTGCATGGCATCTTTGTCTGTGATTCGTTCACCAAAACTGCGACTACAGACAA 202 Query 36967 TTTCCTGTTTTGCCGGGGCAAACTCCTCGATCTCCAGACAGGGCTCGCCGCGCAGCTCGC 37026 | | |||||||||||| | || || | | |||| ||||||| || |||| Sbjct 203 TCTGCTGTTTTGCCGGTGGTGCTTCTTCCAGGGATATGCAGGACTCGCCGTTGAGTTCGC 262 Query 37027 GCACGGTGCGCTCCAGCACGACGTTAAAGTGTTTGCGGAT-AAAGCGGATGTCGGTATCA 37085 | || || ||||| || | |||| | |||| ||| ||||| || || | ||| | | Sbjct 263 GTACCGTACGCTCAAGAATGACGCTGAAGTTTTTCCGGATGAATGCCG-TGTTAGCCTGC 321 Query 37086 CAGAGCTGCAGTGCATTTTTAATACTCATTGCCTCCAGC-TTTCTGGCAATACGCCGGCC 37144 ||||||||||| | ||||||| || || | |||| |||| | || | | || || Sbjct 322 GCCAGCTGCAGTGCTGTGTTAATACCCAGCGCATTCAGCTTTTCCGTCAGT-CTGCGTCC 380 Query 37145 GACGCCCCAGACTTC 37159 || |||||||| || Sbjct 381 TACTCCCCAGACCTC 395 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 37448 CATCACCCGCTGGCTCATGTCGCCATAGAGTTCATAGTTGCTGGAGAAGGCAATGATCCG 37507 ||| ||||| ||||||||| | || || |||| |||||||| || || || Sbjct 690 CATAACCCGTTGGCTCATGCTGTGGTACAGCGCATAATTGCTGGAAAATACATGTATTTT 749 Query 37508 CTGCGGAAACTGCATCTCGCGCAGCTGGAACCAGGGCATGCCCATTTTTATGCCAAGCGC 37567 || | | |||||| | || ||| ||||||||| |||||| | |||||||| || Sbjct 750 CTTCTCCAGGCGCATCTGTCTCACCTGAAACCAGGGCTGCCCCATTCTGATGCCAAGGGC 809 Query 37568 TTTGGCTTCGCGGCTGCGTGCTATCACACAGCCATCATTATT 37609 ||| || || ||||||| || |||||||||||||| ||||| Sbjct 810 TTTTGCCTCCGGGCTGCGCGCGATCACACAGCCATCGTTATT 851 >seq4950 Length=777 Score = 102 bits (112), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 21934 GCAGAGCAGCATTTTCAGCATTCGCATCAGCGAGTTCCTTCGTGTATTTGGCGTCGAGCG 21993 |||||||| |||||||||| ||||||| ||| | |||||||||||||| | || || | Sbjct 98 GCAGAGCATCATTTTCAGCTTTCGCATTAGCTAACTCCTTCGTGTATTTTTCATCCAGTG 157 Query 21994 CTGCGACATCGCGCTGGCGAGTCTGCATGTCAGTGATGGTGTCTTTAGCCAGATTTAATT 22053 | || ||||| |||||||| ||||||||||||| || | | || ||||| || | || Sbjct 158 CAGCAACATCACGCTGGCGCATCTGCATGTCAGTAATTGCCGCGTTCGCCAGCTTCAGTT 217 Query 22054 C 22054 | Sbjct 218 C 218 >seq40 Length=145790 Score = 87.8 bits (96), Expect = 4e-13 Identities = 253/382 (66%), Gaps = 13/382 (3%) Strand=Plus/Plus Query 6003 GGGTGGGAATGCACAATGGCAGTAACGGTGCCCCAGTCTTCCGCGGCCGCGTAATCTTCC 6062 || || |||||||| | ||| | | |||| || || ||||||||||| ||||| Sbjct 99581 GGATGCGAATGCACCACGGCCGCGATCTTGCCGGTTTCCTCGGCGGCCGCGTAGTCTTCG 99640 Query 6063 GGCGACAGCTCAAACTGTTCTT--CCGGCGCGCCGGTGATATTCCGGCACGGGAAATACC 6120 | ||||| | || ||||||| | |||| |||| |||| |||||||| | ||||| Sbjct 99641 GCCGACATGACGAAATGTTCTTCGCTGGCG-GCCG----TATTGCGGCACGGCACATACC 99695 Query 6121 GCTCGACGCGGCTTTTTTGTGCCACCACGCCGCAGCACTCGCGCGGGTATTCTGCCGCAG 6180 ||| ||||| | |||||| |||||||| || |||| || ||| | Sbjct 99696 ATTCGCGGCGGCCGGCCTTGACCACCAGCCCGCAGCATTCCTGCGGATACGTCGCCACGC 99755 Query 6181 CATGCGTC-AGAATGTCGGCAATGGTTTTATCGCGCATGGTTACCTCCGGATCAGGCTGG 6239 |||| ||| | ||| | || || | | ||||||| ||| | || || |||| || Sbjct 99756 CATG-GTCGCGGATGGCCTGCATCGTGCTCTTGCGCATGCTTATCCCCTGACCAGGTCGG 99814 Query 6240 CGCCGGGAAAGCCGCCGAAATCGA--GCCGGGCATCCGAACCAAAGCGTTTTTTACAGTC 6297 || |||||||||||||| | || | || || |||||||| || || || || Sbjct 99815 CGGACGGAAAGCCGCCGAAGTTGATGATTTCGTATTCG--CCAAAGCGCTTCTTGCAATC 99872 Query 6298 GGTCAGCAGGCCCGAGCATTTATCCTGTGCCGGGTCGGTCACCGGGTTACCTTTCAGATC 6357 | || |||||| || || ||| | | ||| ||| | || || || || | ||| || Sbjct 99873 CGACATCAGGCCGGAACACCGGTCCAGCGTCGGATCGTTGACGGGCTTGCCGTCCAGGTC 99932 Query 6358 AAACATGCGCGGGCCGTTGTAG 6379 ||||| || ||| ||||| Sbjct 99933 GAACATCCGGCTGCCCGTGTAG 99954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124701505589076