Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq3330 93.3 4e-14 >seq3330 Length=7198 Score = 93.3 bits (102), Expect = 4e-14 Identities = 215/319 (67%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795 || |||||||||||||| || || ||||| || || || | ||||| || || || Sbjct 171 GCCCGCGCATGATCCTCGACGAACAGCCAATCGCGGACATTTGCGCCTGCGCCGTAAACG 230 Query 39796 GG-AATCTCTTTATTCGTCAAGATACTTGTGA-TGATTTTTGGGATCAGCTTTTCTGGAT 39853 || || ||| || || || ||| || | | ||| || |||||||| ||| Sbjct 231 GGCAAAGGCTTC--TCATCGAGCGCATTGAGAATAACAAGTGGAATGAGCTTTTCCGGAA 288 Query 39854 GTTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGC 39913 || | || ||| | || || |||||||| | | || || |||| | | || || Sbjct 289 AATGGAAGGGACCATAATTGTTCGAGCAGTTCGACAGAACCACCGGCAGACCATATGTCT 348 Query 39914 GGTGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGGGCTTGAAG 39973 |||||| || || |||||||| || |||||||| ||||| |||||| ||| | Sbjct 349 CGTGCCACGCGCGGACCAGATGGTCCGAGGCTGCCTTTGACGCCGAGTACGGAGATGACG 408 Query 39974 GGGCATAAGCTGTCTCTTCGGTAAAGGGAACGCCAGAGTC---TGCCATATCGCCGTACA 40030 | ||||||| || |||||||||||| | ||| ||| || || ||| ||| | | Sbjct 409 GTGCATAAGGCGTTTCTTCGGTAAAG---ATGCCGCTGTCGAATGGCAAATCCCCGAAAA 465 Query 40031 CTTCGTCTGTGGAGACGTG 40049 | ||||| ||||| | ||| Sbjct 466 CCTCGTCCGTGGAAATGTG 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472569389323240