Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq3870 87.8 2e-12 >seq3870 Length=345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/297 (67%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 152618 CGATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGAC 152677 |||||| |||||||| || || |||||||||||| | || || || || || ||||| Sbjct 11 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 70 Query 152678 GCCTTTTGTCACAATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCA 152734 ||| ||||| || | ||| ||| |||| || | ||| ||| ||| |||| || Sbjct 71 GCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGG---GAATCGCGCCTGATTCA 127 Query 152735 GAAAGCGATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATT 152794 | || |||| ||| |||||||| || || |||||||| | | || | || || Sbjct 128 GGAATCGATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTT 187 Query 152795 CCCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAA 152851 ||| ||||||| ||||| || | || | |||| ||| | || || Sbjct 188 CCCGAAACTGG---TGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAA 244 Query 152852 CTATGATATTAAGAAATTGGCCCTGGAATGTGCTTCAAAGCGTATGTATCCGGATAT 152908 ||| || || || | |||| ||||| || || ||||| |||||||||||||| Sbjct 245 CTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATAT 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557921570001160