Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1164 179 2e-39 seq426 129 4e-24 seq396 116 2e-20 seq374 107 1e-17 seq19 107 1e-17 seq1971 102 5e-16 seq833 96.9 2e-14 >seq1164 Length=91045 Score = 179 bits (198), Expect = 2e-39 Identities = 382/566 (67%), Gaps = 7/566 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| ||||| |||||||| |||||||| ||| |||||| || || | | ||||| Sbjct 36625 TGCCATTGGAATTGATTTGGGAACTACCTACTCTTGTGTTGCGGTCCTGAAGAATGGACG 36684 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| |||||||||||||| ||||||||||| ||||| || ||||| | || | Sbjct 36685 TGTGGAAATTATTGCCAATGACCAGGGTAATAGAACCACACCTTCCTATGTGGCATTCAA 36744 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || || | ||||| || |||| || | |||| ||| ||||||| || Sbjct 36745 TGACACCGAGAGAATGATTGGCGACTCTGCCAAGAACCAAGTGGCAATGAATCCTGCCAA 36804 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || || ||||| || || ||||||||||||| || || || | ||||| || Sbjct 36805 CACCATCTTTGACGCCAAGCGATTGATTGGTCGCAAGTTCTCCGAGCCGGTCGTCCAGTC 36864 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAA----CCATATATAG 474623 || ||| || ||||| ||||||||| | | | | | ||||| || Sbjct 36865 CGACATGAAACACTGGCCATTTAAGGTGGTCCA-GACCCCCCAAGACCGTCCATACATCC 36923 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 ||| | || ||||||||| || |||| || || || |||| ||||| ||||| | Sbjct 36924 AAGTCGTCTACAAAGGTGAAACCAAGGAATTCTCTCCAGAGGAAATCTCTTCGATGGTGT 36983 Query 474684 TAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | |||| ||||| | || | |||| | || || ||| || ||| | || || Sbjct 36984 TGACCAAGATGAAGGAGACTGCCGAG-GCCTACCTCGGAGAACCGGTATCCAGCGCCGTT 37042 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || || || || ||||| || || ||||| || || || || || || ||| | Sbjct 37043 GTCACCGTACCCGCCTACTTTAACGACTCCCAACGCCAGGCCACCAAGGACGCCGGAGTA 37102 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| || || ||||| || ||||| || ||||| || || ||||| | || ||| Sbjct 37103 ATTGCCAAACTCAACGTTTTGCGCATTATCAACGAACCGACTGCCGCCGCCATGGCCTAT 37162 Query 474863 GGTCTTGATAAGAATTCTGACAAAGA 474888 || || | ||| || ||||| || Sbjct 37163 GGACTGGGAAAGCCGTCGGACAAGGA 37188 >seq426 Length=101737 Score = 129 bits (142), Expect = 4e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || || || || || || || ||| ||||||| || || Sbjct 65 ACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGGGT 124 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || |||||||| ||||| ||||| ||||| || || ||||||||||| || Sbjct 125 GCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGAATACC 184 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||||||||| |||||| ||| |||||||||| | ||||| Sbjct 185 CTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCAGAACCCTCAACCTCAAG 244 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || |||||||| || || ||||| Sbjct 245 GGTGATGGTCTTGCCAGTTAGAGTCTTTACAAAGATTTG 283 >seq396 Length=82706 Score = 116 bits (128), Expect = 2e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || || || || || || | ||| ||||||| || || Sbjct 65 ACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGGGT 124 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||||||||| ||||| ||||| ||||| || || ||||||||||| || Sbjct 125 GCGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATACC 184 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||||||||| |||||| ||| |||||||| | | || || Sbjct 185 CTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCGGAACCCTCAACCTCTAG 244 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || || ||||| || || ||||| Sbjct 245 GGTGATGGTCTTGCCAGTTAGGGTCTTTACAAAGATTTG 283 >seq374 Length=102525 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || || || || || || || ||||| | ||||| Sbjct 870 ACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGT 811 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || || ||||| || ||||| || ||||| |||||||| || ||||| || Sbjct 810 GCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCC 751 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||||||||| ||||| ||||| || || | | | || || Sbjct 750 CTCCTTGTCTTGAATCTTAGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAG 691 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| ||||| ||||||||||| Sbjct 690 AGTGATAGTCTTTCCAGTGAGGGTCTTTACGAAAATTTG 652 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| ||||| | | || || || ||||| || ||||| || ||||| ||| Sbjct 599 TTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGT 540 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| || |||||||| || |||||| ||||| ||||| ||||| Sbjct 539 TGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTTGTCTTGACGTTCTCAATGGTATCG 480 Query 480714 GTGTG-TGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || | ||| | |||| || || || ||||||||||| ||||||||||| Sbjct 479 GAGCCCTCAACCTCCAAAG-TAATGGTCTTGCCAGTGAGAGTCTTTACGAAAATTTG 424 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| || || || || || ||||| || | ||||| Sbjct 186 ACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGT 127 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || |||||||| ||||| ||||| ||||| || || || || ||||| || Sbjct 126 GCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCC 67 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| || ||||| Sbjct 66 CTCCTTGTCCTGGATCTT 49 >seq19 Length=879724 Score = 107 bits (118), Expect = 1e-17 Identities = 263/395 (67%), Gaps = 24/395 (6%) Strand=Plus/Plus Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 || ||||||| |||||||| | ||||||| ||| ||||| | || | | | | || Sbjct 540264 AAGGTGTAAACCCTGATGAGGTTGTTGCAATTGGTGCTGCAATTCAGGGTGGTGTATTGA 540323 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 ||||| || | | || | || ||||| | |||| || || ||||||| Sbjct 540324 CAGGTGAAGTAAAAGA----CGTTTTATTATTGGA--TGTT------ACCCCGCTTTCAT 540371 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 ||||| |||| || | || || | ||||| || || ||||| ||||| |||| | Sbjct 540372 TAGGTATTGAGACCATGGGTGGTGTGATGACAAAACTGATTGAAGCCAATACAACTATTC 540431 Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 | | |||||| || || || || ||| | |||| ||||| | | ||| |||| Sbjct 540432 CTTCTAAAAAAGCAGAAACTTTCTCTACTGCTGCTGACAATCAGCCTTCAGTAGAAATCC 540491 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAA---AGATAATAACAA-ACT--TGGAACTT 476078 | || || | || ||| | | ||| || | | ||| ||| |||| || Sbjct 540492 ATATTTTACAGGGAGAACG------CCCTATGGCAGCTCAAAACCGTACTATTGGACGTT 540545 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 ||| | | || |||||||| || || || | || |||||||||||||||||| | |||| Sbjct 540546 TTATTTTAGATGGTATTCCACCAGCACCTCGTGGTGTTCCTCAAATTGAAGTTGCATTTG 540605 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||||||||| || ||||| || |||| | |||| Sbjct 540606 ATATTGATGCCAACGGTATCCTGCATGTAAGTGCT 540640 Score = 105 bits (116), Expect = 4e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 474668 ATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA 474726 |||||| ||||| || | ||||||||| |||| || || | | | | || || || Sbjct 539531 ATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAGACTTTT-TAGGTCAGGA 539589 Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||||||||| || || || || ||||| || ||||| ||||| | |||||||| || || Sbjct 539590 AGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACGCACAACGTCAGGCTAC 539649 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 ||||| || || ||||||||| | | ||| | | || ||||| ||||| || || Sbjct 539650 AAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCATTAACGAACCTACTGC 539709 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAA 474873 ||| || | || |||||| | ||||| Sbjct 539710 AGCGGCTTTAGCCTATGGTTTGGATAA 539736 >seq1971 Length=9940 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || ||| || || | || || || | || || Sbjct 4136 ACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 4077 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 4076 GCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCC 4017 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| ||||| ||||| ||||| | | | | |||| Sbjct 4016 CTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCA-CCTCAA 3958 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| || ||||| ||||||||||| Sbjct 3957 GGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTG 3918 >seq833 Length=35181 Score = 96.9 bits (106), Expect = 2e-14 Identities = 337/516 (65%), Gaps = 10/516 (2%) Strand=Plus/Plus Query 474366 TAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAA 474425 ||| ||| ||||| |||| || ||||| |||||||| |||||||| |||||||| | Sbjct 19721 TAGGTGTCTGGCAGAATGACCGTGTTGAAATTATTGCCAACGACCAAGGAAATAGAACTA 19780 Query 474426 CACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATC 474485 |||| ||||| | ||||| || |||| | | | |||||||| || || || | | Sbjct 19781 CACCTAGCTATGTCGCCTTTACCGATTCTGAGCGTTTGATTGGAGACGCCGCCAAGAACC 19840 Query 474486 AAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATT 474545 | | ||| || || || ||| | || || || || | ||||||||||| || | Sbjct 19841 AGGTTGCGATGAACCCCACCAACACTGTATTCGACGCCAAGCGTTTGATTGGTCGCAAGT 19900 Query 474546 TTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG 474605 | ||| || ||||| || |||||| || ||||| || ||| | || | | Sbjct 19901 TCTCCGATCCCGTCGTCCAGTCCGATATGAAGCACTGGCCATTCAAGATCATTGACAAGG 19960 Query 474606 GTGGTAAACCA--TATATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCA-CCGG 474662 | | || ||| || || | |||| | || || || || | || || || | Sbjct 19961 GAGACAAGCCACTCATCCAGGTCGAGTACAAG--GGAGAGAC-CAAGACCTTCCAGCCCG 20017 Query 474663 AACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGA 474721 | | |||||||| ||||| | |||| ||||| | |||| |||| | | || ||| Sbjct 20018 AGGAGATTTCTTCGATGGTCCTGACCAAGATGAAGGAGACCGCCGAG-GCTTTCCTCGGA 20076 Query 474722 CAAGA-AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCA 474780 |||| || | | || || ||||| || || || || ||||| || || || ||||| Sbjct 20077 -AAGACCGTCAACAACGCCGTTATTACCGTACCCGCCTACTTTAACGACTCGCAGCGTCA 20135 Query 474781 AGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 || || || || || || || || || || || ||||| || || || || Sbjct 20136 GGCCACCAAGGACGCCGGCGTCATCGCCAAGCTCAACGTCCAGCGTATCATCAACGAGCC 20195 Query 474841 AACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||| | || || ||||| || ||||| Sbjct 20196 CACCGCCGCCGCCATCGCCTACGGTCTCGAAAAGAA 20231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267736224863396