Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq757 336 5e-88 >seq757 Length=83746 Score = 336 bits (372), Expect = 5e-88 Identities = 1092/1669 (65%), Gaps = 85/1669 (5%) Strand=Plus/Plus Query 189 ATCCAATAGCTGGCCCAAACCACGCGCCCGACAATATCCAGGTCTTGCAACTGCTCTTTG 248 |||||| || ||||| || ||||| || | || |||||||| | ||||| || || Sbjct 48700 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48759 Query 249 GGCACAGTCATTTCTGTGTACGCCCGATTCTCGCTTATGATCGCAATCGATCCGTCAAAC 308 || ||| ||| || ||| ||| ||||| || ||||| ||| || ||||| ||| Sbjct 48760 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 48819 Query 309 CTACGCTGTAGGCGCTTGGCATACAGGTGATCCTGGAGCCGGATGACGTAAACAGCCTCG 368 ||||| || | || ||||| || || || | |||||||||||||| |||||||| Sbjct 48820 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 48878 Query 369 TCCCGTACCTCTCGATACGA--GTGGTCAACCAGGACGGTATCCCCATCGGACAACAACG 426 |||| | | | | || |||||||| || || ||||| |||||| | | Sbjct 48879 TCCCTCAAG-CGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTC 48937 Query 427 GCTCCATTGAGTCGCCGCCAACGCGGACAGCTGAGAGGTTAGCGGTGTCGAGCCCCTTCT 486 |||||| || || ||| | || |||| || || || || | ||| || || | || Sbjct 48938 CCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCT 48997 Query 487 TTCTCAGGCTGTACCTGGTAAACGCCAGCTTCGTCAGTTCTCGGGCTCCCTCTGTCCAGG 546 | | || |||| ||| ||||| |||| || || | || || || |||||| Sbjct 48998 TGCGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGG 49057 Query 547 AGCCATGTCCCGCGCTTACTTTCGTGTCATACAACGGGATGTAGGCATAGTCGGGGGCTC 606 ||| |||||||| || | | ||| ||||| || | ||| || || | | ||| Sbjct 49058 CGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC--CTC 49115 Query 607 C-CGCTGGGCT----AGCGGCCTCTGGCGACTCGCCCCCCGTACTCCCCGATGCACTCTG 661 | | ||| || ||| || | | ||| | ||||| || || || | Sbjct 49116 CGCAATGGACTGGGAAGCAGCTCCCTTCAACTTGTCCCCC----TCGCC--TGAA----- 49164 Query 662 TTTGCCGGCGATCAACCAATCCAAGGATACGCCTGCCGCCTCCGCTATAGCCGCACAGCG 721 || || || ||||| | ||||| |||||| || || | |||| || Sbjct 49165 ---GCAAGC---CAGCCAAT----GTCGACGCCGACCGCCTTAGCGATGTCTACACACCG 49214 Query 722 GGATGCCTTTGGCTCGCTATCACCTGTGAGGTAAGCCTCCAAGGTGCTTCGGGGGATAGC 781 | | |||| ||||| || | || || |||||| ||| | ||||| ||| |||||||| Sbjct 49215 CGCTACCTTGGGCTCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGC 49274 Query 782 CGTTTTCCGGGCGAGGCTATCACCGTTTCCGACTATGTTTGCGCACTCACGAATGCGGGC 841 || || || | ||| || |||| |||| | ||||| | || || || | Sbjct 49275 GGTAAGTCGCGCCAACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTC 49334 Query 842 CGCAAGGCTGTCTGTCATTTCGCTTTCTCACCTGAGGAATACGAAAC-------CTGGAC 894 ||| || | || ||||||||||||||| | |||| || |||||| ||| || Sbjct 49335 CGCCAGCCCTTCGCTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCAC 49394 Query 895 GAAACTAGGTTTCTGATTTCGTATTCCGaaaaaaaCCATACAAATCAACGATATGGTCAA 954 || | | |||| | |||| ||| ||| || |||| ||||| || || | ||| Sbjct 49395 AAAGCGAAATTTC-GCTTTCT-----CGATAAAG-CCTTACAGATCAAAGAGATAGACAA 49447 Query 955 TTTCAGAACCTCGA--ATGCCGAAATTCAGCAAACGAAATTCCGTTTT-CGGTTGAT--- 1008 ||| ||| | | | ||| || | | || ||||| || |||| || || | Sbjct 49448 AATCA--ACCACCATCAAGCCAAAGATG-GAAAGCGAAAAGCCATTTTTCGCTTTACCAC 49504 Query 1009 -TGGTCTTCCGAAAACGACTATGTTTATGCCCTAAGTCACGTTAGACAACCCAAGTAGTC 1067 | || | | | |||||||||||||||| || |||||||||| ||||| | | Sbjct 49505 ATAGTTAT----ATTTGGCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAACC 49560 Query 1068 GCCCTGCATGGCGGCTGA-AATGGAACGTAGGCATGAACAGAACCGAAATCCCACGCGAC 1126 |||| || || | |||||| |||||||||||| |||||||||||| | ||| Sbjct 49561 ACCCTTGCCGGTGGTTATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGAC 49620 Query 1127 AACAACGTCCGCTGGGAGTGGATCAAATACCAACTCCGCGCCAGGGGATCGTCCCTGGCC 1186 | | | || ||||| ||||||||||||||||| || || | || |||| || || Sbjct 49621 CCAACCCTGCGATGGGAATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCA 49680 Query 1187 GAGGTGGCCCGCTCCCTCGACGTCTCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAACCC 1245 |||| || || ||||| | ||| | || ||||| ||||| |||| | | | Sbjct 49681 ATCTTGGCGCGTGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGC 49739 Query 1246 CTACCCTCGGGTAGAGCGCGCCATCGCTGCCGTGCTCGA--CCTCAGCCCCCTGGTGCTG 1303 || || || | ||||| || || || |||||| | | ||||| || | | || Sbjct 49740 ATATCCGCGAATGGAGCGAGCTATTGC--CCGTGCGCTAGGCCTCAAGCCAATCGACTTG 49797 Query 1304 TGGCCTGAGCGCTGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCGAATCGTTCGGAA 1363 ||||| || || ||| || ||| | || | || ||| | | || | ||| Sbjct 49798 TGGCCCGAACGTTGGAACGCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA 49857 Query 1364 ACCCTCAAGGCATATGACAGTGTCATATGCCGATCCGGGAAAAATACCAGATACGCTGAC 1423 | ||| ||| | || || ||| | | | | || |||| | || | Sbjct 49858 ---CACAACGCAACT-------TC-TA-GCCAA---GAGCATAAC-CCAGCTTA--TGCC 49899 Query 1424 CAAGCGCAGCGTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCA 1483 | || |||||| ||| | ||| || | |||||| ||| || || || || | Sbjct 49900 CTTCGACACCGTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTA 49959 Query 1484 CCCTGGACATCTTCGATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACG 1543 | | ||||||||| ||| || ||||||| || ||||| || || | ||||| | | Sbjct 49960 CGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATG 50019 Query 1544 CCGCCCAGGTCAGCGAGCTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACG 1603 |||| |||||||| || ||| ||||||| |||||||| | || ||| || |||||||||| Sbjct 50020 CCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACG 50079 Query 1604 AGGTCGCCGCCCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACG 1663 | | | || |||||||| ||| | ||||||||||||||||| ||| ||||||| |||| Sbjct 50080 AAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACG 50139 Query 1664 CCTGGTCGAGTCCCGCCCGAGCTGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGG 1723 | |||||||| || |||||| | || || |||||||| ||||| | ||| | || || | Sbjct 50140 CGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTG 50199 Query 1724 AGGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCG 1783 | || || || || ||| | | ||| |||||||||| || || || ||||||| Sbjct 50200 AAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCG 50259 Query 1784 TGGCCTATGGCCGAGACGCACTGCTCGCCGAGCTGGGCCGCTTGGAGCG 1832 |||| || || || || ||||| ||| ||||| || || ||| ||| Sbjct 50260 TGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 50308 Score = 304 bits (336), Expect = 3e-78 Identities = 384/526 (73%), Gaps = 4/526 (1%) Strand=Plus/Plus Query 8553 ATGGAACCCAACAAAGCCCTGGAAAAAATCAAGAAACTGCTTCGCCTAGCAGGCAGCAGC 8612 ||||| | | ||||||||| || ||||||||||| ||||| ||||| |||| ||| Sbjct 56273 ATGGACCAGAGCAAAGCCCTAGACAAAATCAAGAAGCTGCTGCGCCTGGCAGCTAGCGAT 56332 Query 8613 AACCCACACGAAGCGGCGGCCGCCATGCGCCAGGCGCGGGCGATGATGGAGAAACACGGC 8672 ||||| |||||||| || || ||||||| |||||| || || ||||||| || || || Sbjct 56333 AACCCGCACGAAGCTGCCGCAGCCATGCACCAGGCCCGCGCCTTGATGGAAAAGTACCGC 56392 Query 8673 ATTGGCGAGAGCGATATT--GCTCTGGCTGACGTCACCGAACACGGCACCGGTAGCGGCT 8730 ||| ||| |||||| ||||| | || || |||| || | || ||||||| | Sbjct 56393 CTTGAAGAGTCGGATATTCAGCTCT--CCGAGGTATTCGAATGCGCCGCCCGTAGCGGTT 56450 Query 8731 CCAAACTGAAGCCCGCGCAGTGGGAAGCTAATCTCGGCGGCACCGTCGCGAAGGCATACT 8790 | || ||| || |||| |||||||| || || | || | ||| | |||| ||| Sbjct 56451 CAAAGATGACCCCGCCGCAATGGGAAGCCAACCTGGTGGGTGCAGTCACCCAGGCCTACG 56510 Query 8791 CCTGCAAGCTGTTCTTCGCGGCTGGCATCGGCCAATGGCGCTTCGTGGGCGAAATGGCCG 8850 ||||||| | | ||| ||| || |||||| ||||||| || | |||||| |||||| Sbjct 56511 CCTGCAAAGTCCTGTTCATGGCGGGTATCGGCGAATGGCGTTTTATCGGCGAACTGGCCG 56570 Query 8851 AGGTGGCCAGCTACACCATGGCGATCCTGCTGCGCCAGGTGCGCAAGGCCCGCCGCGACT 8910 || ||||||||||||||||||| | |||| ||||| || ||| || ||||||| |||| Sbjct 56571 AGCTGGCCAGCTACACCATGGCCTTGTTGCTACGCCAAGTCCGCCAGTCCCGCCGTGACT 56630 Query 8911 ACATCGCCACCGAGCTTAAGCGCTGCAAGGCCTCCACCAAAACCAAGCGTGGCGACCTGT 8970 ||| | || || | |||||||||||| | | ||||| |||||||||| |||| ||| Sbjct 56631 TCATTGGAACGCAGTTGAAGCGCTGCAAGCCTGCTACCAAGACCAAGCGTGCCGACGTGT 56690 Query 8971 TCTGCGACGCCTGGGTGTGGTCGGTGCGTAAGCAGGTCAATCAGTTCGCCGGGAGTGCGC 9030 |||| | ||||||||||| | ||||| ||||||| ||| || || | | Sbjct 56691 TCTGTGGCGCCTGGGTGTCAGCAGTGCGCCGACAGGTCATGGCGTTTGCTGGCAACGATG 56750 Query 9031 AGCCGTCGCTGGCAGCCGAGGCGTACATGGTGAAGCACCACCCCGA 9076 |||| || | |||| | | |||||||||| | |||||||| |||| Sbjct 56751 AGCCTTCACCGGCAACAGCGGCGTACATGCTTAAGCACCATTCCGA 56796 Score = 123 bits (136), Expect = 6e-24 Identities = 220/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9556 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9615 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 57316 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57375 Query 9616 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9675 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 57376 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57435 Query 9676 CTTGTCGAACTCCAGCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGG 9729 || | ||| | ||| |||||||| ||||||| | || ||| ||||| Sbjct 57436 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57492 Query 9730 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 9789 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57493 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57552 Query 9790 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGTC 9849 ||| ||| | ||| ||||| || |||||| |||||||| |||||||||| ||||| Sbjct 57553 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57612 Query 9850 GAGCGGGTCGAGTGGCTGGAC 9870 ||||| || || ||||| ||| Sbjct 57613 GAGCGAGTGGAATGGCTAGAC 57633 Score = 84.2 bits (92), Expect = 5e-12 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 5922 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGC 5981 || |||||| || |||| | ||||| | |||| |||||||| || || || | Sbjct 53781 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53840 Query 5982 AGCCAGACGAAGGCCGGCGAAGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6041 | | |||| |||||| || | |||||||||||||| || |||||||| | ||| Sbjct 53841 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53900 Query 6042 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTG 6101 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53901 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53960 Query 6102 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 6152 | || ||||| || ||| ||| |||| | || ||| ||| | ||||| Sbjct 53961 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 54011 Score = 84.2 bits (92), Expect = 5e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 8472 CACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8531 |||| ||||||||||||| || | ||||| |||||||| | |||||| | | ||||| Sbjct 55937 CACTAAGCGAAACCGCCCTGGTCAT-CCGGGGTGGTCTGCCAGGCGTGGTTGCCTGGTAC 55995 Query 8532 TGACGAGCAGCCGAGGAATACATGGA 8557 |||||||||||||||||| | ||||| Sbjct 55996 TGACGAGCAGCCGAGGAACAAATGGA 56021 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 8477 AGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGACG 8536 ||||||| ||||||||| | | ||| |||||||||||||||||| |||||||||||| | Sbjct 56944 AGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 57002 Query 8537 AGCAGCC 8543 ||||||| Sbjct 57003 AGCAGCC 57009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118567857869718