Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq10 170 2e-37 seq3529 109 6e-19 >seq10 Length=120092 Score = 170 bits (188), Expect = 2e-37 Identities = 272/386 (70%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 || |||||||| ||||| |||||||| | ||||||||| ||||| || |||||||| || Sbjct 23590 AGGTGTTTTGCAACACCGATAGGACCCATGCCAGGACCACCACCACCGTGTGGAATGCAA 23649 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAG 138289 || || || || | || || ||||| || || ||||| ||| | | || | | || Sbjct 23650 AAAGTTTTGTGCAGGTTCAGGTGACAGACGTCAGCACCGATA-TGTCCGGGACTGGTTAA 23708 Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349 |||||| |||||||| | |||||||||||| | ||| ||||| || || || ||||| | Sbjct 23709 ACCTACTTGTGCATTCATATTTGCACCATCCATATAAACCTGTCCTCCGTTTTCATGGAT 23768 Query 138350 GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAAT 138409 ||| || || || | | ||| || ||| || |||||||| || || || || || | Sbjct 23769 GATGTTGCAGATGTCAATAATGCTTTCTTCGAACACACCATGGGTAGAAGGGTAAGTGAC 23828 Query 138410 CATAATACATGAGAGTTCAAATGTAT--TCATGATTGCTTTCTTCTCTAGATCTTTGATG 138467 ||| | ||| || || ||| | ||| || || ||||| | || || | | Sbjct 23829 CATTAAACAGGAAAGCTCATTTTTATGCTCCTG--GGCTTTAGCTTTAAGGTCCTCTACA 23886 Query 138468 TCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCA 138527 ||||| || || | ||| | | || || |||| ||||||||| ||||| ||||| Sbjct 23887 TCTATATTTCCGTTTTCAAGAGATTTAACGATCACAATTTTCATTCCGGCCATTGCTGCA 23946 Query 138528 CTAGCAGGATTAGTTCCATGTGCTGA 138553 ||| ||||| |||||||| || || Sbjct 23947 GAAGCCGGATTGGTTCCATGAGCAGA 23972 >seq3529 Length=9619 Score = 109 bits (120), Expect = 6e-19 Identities = 340/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || || ||||| || || || || || || ||||| ||||| ||||| ||||| || Sbjct 9293 ACGCCGATCGGACCAACACCCGGCCCGCCGCCGCCATGGGGAATGCAGAAGGTCTTGTGC 9234 Query 138243 AAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | || | || || ||||| ||||| ||| || | || || || || ||| | || Sbjct 9233 AGGTTCATGTGGCAGACATCGGCACCGATA-TCGCCGGGACGGGCAAGCCCGACCAGCGC 9175 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| || || || ||||||| ||| ||||| || |||| | ||||| || | | || || Sbjct 9174 ATTCAGGTTGGCGCCATCGAAATAGACCTGGCCGCCATGCTGATGAATGACCGTGCAGAT 9115 Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | ||| | | ||| || |||||||| ||||||||||| || ||||| | || Sbjct 9114 ATCCTTGACGCCTTCTTCGAACACACCATGGGTCGATGGATAGGTGATCATCAGTGCTGC 9055 Query 138422 GAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATC 138481 ||| | | | | | ||||| || || || | | || || | |||| | Sbjct 9054 GAGATTGGCACTGTGCTGGTCGGCTTTTGCCTTGAGGTCCTCAAGATCGATATCGCCAGC 8995 Query 138482 ATCATCACACTTGACAC--CTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 || || || || ||| | || || ||| || ||||| ||||| || ||||| Sbjct 8994 CTCTTCGCA--TGCCACGACCACTACCCGCATGCCCGCCATATGGGCACTGGCCGGATTG 8937 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTTG 138598 || ||||| || || || || || || || | || | | |||| || ||||| | Sbjct 8936 GTGCCATGCGCCGATTCCGGGATGAGGCAGATATCACGATGCGCATCGCCCCGATCC-AG 8878 Query 138599 ATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTG 138658 |||||| | || || | || || ||||| |||||||| || || || || || Sbjct 8877 ATGATAGCGGCGAATGGCCAGGAGACCGGCATATTCACCCTGGCTGCCGGCATTCGGCTG 8818 Query 138659 TAATGATATAGAATCAAAACCTGTGATATCACATAACCA 138697 | ||| | | |||||| || ||||| || | ||||| Sbjct 8817 CAGTGAAACTGCATCAAAGCCGGTGATCTCGGACAACCA 8779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578923658544040