Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq120 192 8e-44 seq67 122 1e-22 seq553 95.1 2e-14 seq117 89.7 7e-13 >seq120 Length=487886 Score = 192 bits (212), Expect = 8e-44 Identities = 527/798 (66%), Gaps = 36/798 (5%) Strand=Plus/Minus Query 47755 TCCTCAACAAACTGACGGACAGAATATTGAT--TTCCTGTGGCAATAACAAAATCATCAG 47812 |||||| |||| | |||||||| || || | | ||||| ||||| ||||| || || | Sbjct 249355 TCCTCA-CAAAATCACGGACAG--TAGTGGTAATCCCTGTTGCAATCACAAAGTCTTCTG 249299 Query 47813 GTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGT 47872 || ||| || ||||| || |||||||| || |||| ||||||| | ||||||||||||| Sbjct 249298 CTTTTTCCTGCTGAAGGATCAACCACATGGCTTCGATATAATCTTTAGCATGTCCCCAGT 249239 Query 47873 CACGAAGTGC--ATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGC 47930 |||| | || || ||| || |||| ||||||||| | || || | ||| Sbjct 249238 CACGCTGCGCTGAT-AAG-TTACCTAAATATAAACAATTCTGAAGTCCCAAGGCAATTTT 249181 Query 47931 TTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATG 47990 | ||| | ||||| || || || ||||||||||| || | | || |||||| Sbjct 249180 CGCTGCTGCACGGGTAATTTTTCGGGTCACAAAAGTTTCTCCTCTTAAAGGGCTTTCATG 249121 Query 47991 ATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACT 48048 ||| || | ||| ||| |||| || ||||| || | ||||||||| || | || Sbjct 249120 ATTGAATAAAATCCCATTACAAGCGTACATGTTATAAGCTTCACGATAATTTACCGTA-- 249063 Query 48049 ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 |||||||| |||| | ||| || || |||||||||| | ||||| || || || || Sbjct 249062 ATCCAGTAGGCATACATTTTGGCCACTGCATAAGGAGACCTGGGATAAAACGGCGTCGTT 249003 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATA 48168 || | || ||| | | |||||| |||||| | |||| || || || ||||| || Sbjct 249002 TCACTTTGGGGAACCGCCTGCACCAAACCATACAATTCAGAAGTAGAGGCCTGATATATT 248943 Query 48169 CGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATG 48228 | | | ||||| | | | || | || || || | || | || || || Sbjct 248942 CTGGTTTTTTTCTCCATACCCAAAATCCGTATGGCTTCCAGGAGCCTTAATGTCCCGATA 248883 Query 48229 GCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCC 48288 |||| | | | ||||| || ||||| || || || | ||||| ||| || Sbjct 248882 CCATCCGCATTCGCCGTATATTCCGGCATTTCGAAACTCACATGAACATGGCTCATGGCT 248823 Query 48289 CCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAG 48348 | || |||||||| || ||||| || | || |||| | | ||| || ||||| Sbjct 248822 GCCAGGTTATAAATTTCGTCTGGCTGGGTTTCTTGTATAATGCGGATTAAGTTGGTAGAA 248763 Query 48349 TCTGTTAAGTCTCCATAATGCA----------------ATTTTAAT--TGATC---ATAA 48387 || || | || ||| |||||| ||||| || || || ||| Sbjct 248762 TCGGTCAGATCCCCAAAATGCAGTTTAAAATTCACGCCATTTTCATGCTGGTCCTGATAC 248703 Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447 | |||||||| | || |||||||| ||||||| || | | |||||||| | Sbjct 248702 AAATGATCAATACGATCTGTATTAAACAAAGAAGATCGTCTTTTTAGTCCATGAACAAAA 248643 Query 48448 TA-CCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGT 48506 || || ||||||| ||||| |||||| | || | |||||| || || || | || || Sbjct 248642 TATCCTTTTTTCAATAAGAA-TTCTGCAAGATAGGCACCATCCTGACCCGTTACCCCTGT 248584 Query 48507 GATTAAAGCAACTTTCAT 48524 ||||||||| || ||||| Sbjct 248583 GATTAAAGCTACCTTCAT 248566 >seq67 Length=64939 Score = 122 bits (134), Expect = 1e-22 Identities = 252/375 (67%), Gaps = 0/375 (0%) Strand=Plus/Minus Query 47944 GTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATA 48003 || ||||| || || || || ||||| || || | || ||||| || || || ||||| Sbjct 21640 GTGATCTTGCGGGTCACGAAGGTTTCGCCGCGCTTGGGCGATTCGTGGTTGAACAGAATG 21581 Query 48004 CCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAG 48063 || | ||||||||||| ||||| | ||| || |||||| |||||||| | || Sbjct 21580 CCGTTGCAGGCATACATGCCGTAGGCTTCGCGGTAGTTCACGCTGATCCAGTAGGCGTAC 21521 Query 48064 AGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTC 48123 || || || | | || || || |||||||| || ||||| || |||| || || Sbjct 21520 AGCTTGGCCGCGGCGTAGGGGCTGCGCGGATAGAAGGGGGTGGTTTCCTTCTGCGGCGTT 21461 Query 48124 TCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCC 48183 || |||||| || ||||| || || || || || |||| || || | |||||| Sbjct 21460 TCCTGCACCAGGCCGTAAAGCTCCGACGTCGACGCCTGGTAGAAGCGGGCCTTGTCTTCC 21401 Query 48184 ATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCA 48243 | || || | |||| ||||| |||| | ||| ||||| | | | || | | | Sbjct 21400 AGCTTCAGGATGCGGATCGCCTCCAGCAGGCGCAGCGTGCCCAGGCCGTCGGCGTTGGCG 21341 Query 48244 GTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATC 48303 || ||||| || || ||||| || ||| || ||||| || | || || || ||| Sbjct 21340 GTGTACTCCGGTTCTTCGAACGACACGCCTACGTGGCTCTGCGCGGCCAGGTTGTAGATC 21281 Query 48304 TCATCTGGTTGAACC 48318 || || ||||| ||| Sbjct 21280 TCGTCGGGTTGCACC 21266 >seq553 Length=5624 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 2175 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 2116 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 2115 TGAGCTAATCCCCC 2102 >seq117 Length=76055 Score = 89.7 bits (98), Expect = 7e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGGAGGCTTTCACC--TCGCTGGTTTTCAAGACCA 53541 |||||||| ||| ||||||||| |||||| | ||| ||| |||| ||||||||||||| Sbjct 75843 GCGGAGAGAGTGGGATTCGAACCCACGGAAGGTTTGACCCTTCGCCGGTTTTCAAGACCG 75784 Query 53542 GAGCCATAAACCACTCGACCACCTCTCC 53569 | ||| |||||| |||| ||| |||||| Sbjct 75783 GTGCCTTAAACCGCTCGGCCATCTCTCC 75756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665408492991640