Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq44 212 7e-50 seq1288 111 2e-19 seq972 98.7 1e-15 seq1327 96.9 4e-15 >seq44 Length=77107 Score = 212 bits (234), Expect = 7e-50 Identities = 568/862 (66%), Gaps = 10/862 (1%) Strand=Plus/Plus Query 75221 ATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACA 75280 ||| ||||||| ||| | |||| |||||||| || |||||||| | | | | || || Sbjct 9213 ATGCTCATGCGTGTCTCTCTCGGTATCCACGGCGATGACATTGACGCCGCCGTCGAAACC 9272 Query 75281 TACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGT 75340 ||| || || | || | || | || | ||||| || |||||||||||||| | ||| Sbjct 9273 TACCACCAGCTCTCGAAGCGTCTCTTTACGCACGCCACGCCAACCCTCTTCAACTCGGGT 9332 Query 75341 ACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAAC 75400 || || | ||| ||||||||| ||||||||| || | ||||||||| ||| || Sbjct 9333 ACCCCCACACCCCAGATGTCCTCTTGCTTCCTCGTCCAGATGAAGGAGGACAGCATCGAC 9392 Query 75401 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 75460 |||||||| | || |||| | |||| || | |||||||||| || || ||| | || Sbjct 9393 GGTATCTACGAGACACTTAAGCAGTGCGCCCTCATCTCAAAGTCTGCCGGTGGTCTCGGT 9452 Query 75461 ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCA 75520 || |||||| | | | |||| || || || || || || || || Sbjct 9453 ATCGCCATCCACAAGATCCGTGCCAGCCGCTCCTACATCCGCGGTACCAACGGCACCTCG 9512 Query 75521 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCG 75580 | || | | |||||||||||||| || || | ||| || ||||| || | | || | Sbjct 9513 AACGGACTCGTACCAATGCTTCGCGTCTTCAATGACACTGCCCGCTACGTCGA-CCAGGG 9571 Query 75581 GGGCG----TCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCAT 75636 |||| |||||||| || | || |||||| | || |||||||| ||||| || | Sbjct 9572 TGGCGGAAAGCGCAAGGGTGCCTTTGCCGTCTACCTCGAGCCATGGCACGCCGACGTCTT 9631 Query 75637 GGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTT 75696 ||||||||||| | || ||||| || | || ||| || | || ||||| Sbjct 9632 TGAGTTCCTTGATCTTCGCAAGAACCACGGCAAGGAGGAGATGCGTGCCCGCGACCTCTT 9691 Query 75697 TTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTC 75756 | | || ||| | | || || |||||| |||| || ||| | | ||| Sbjct 9692 CTACGCGCTCTGGGTCTCTGATCTGTTCATGGAGCGTGTCGAGACCAACTCTGACTGGAG 9751 Query 75757 TCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAG 75815 ||| |||||||| | ||||||| || ||| |||| || | ||| || ||||| | Sbjct 9752 TCTCTTCTGTCCCAATGAGGCACCTGGCCTCGCCGAGTGCTG-GGGAGATGAGTTCCGCG 9810 Query 75816 CCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAAT--GCG-ACTGTACCAGCCGCCG 75872 |||||||| |||||||| | | | | | | || || ||| || | Sbjct 9811 AGCTCTACACCAAGTATGAGGCGACACCTGGCCTCTCTCGTCGCACCGTAAAGGCTCAGG 9870 Query 75873 ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACA 75932 || | ||| ||||| || | ||||||| ||||| || || || || || || |||| Sbjct 9871 ATCTCTGGTTCGCTATCATCGAGTCACAGATCGAGACCGGTACCCCCTACATCCTCTACA 9930 Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 |||| ||||| |||| ||| ||||| |||| | ||||| ||| || || | Sbjct 9931 AGGACGCTTGCAACAGCAAGTCCAACCAGCAGAACCTCGGAACCATCTCTTGCAGCAACC 9990 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 ||||||| || ||| | ||||||| | ||||| || || ||||| | || | Sbjct 9991 TTTGCACCGAGATTGTTCAGTACACCTCTCCCGATGAAGTCGCCGTGTGCAACCTCGCCT 10050 Query 76053 CAATCGCCCTTCCAAAGTATGT 76074 | |||||| | ||||||| ||| Sbjct 10051 CTATCGCCTTGCCAAAGTTTGT 10072 Score = 116 bits (128), Expect = 4e-21 Identities = 306/458 (67%), Gaps = 22/458 (5%) Strand=Plus/Plus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 ||||| || |||||| | || | ||||| ||||| || ||||| ||| | || ||| | Sbjct 10494 GGTCTCCGCAACAGTTTGATGGTTGCACCCATGCCTACCGCCTCGACCTCTCAGATCCTC 10553 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCA 76606 || || || || || ||||| ||||| | ||||||||| | | |||||| Sbjct 10554 GGAAACAACGAGGCGTTCGAACCGTACACCAGCAACATCTACAGTCGTCGCGTCCTCGCC 10613 Query 76607 GGTGAGTT---TGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTC 76663 || ||||| |||| ||||||||||| || |||| ||||||| | || ||| ||| Sbjct 10614 GGAGAGTTCACTGTC---GTCAACAAGCAGCTGCTCAAGGACCTCATGGAGCTTGACCTC 10670 Query 76664 TGGTCCAAGGATATGAAGGATC---TCATGG-TGA-AAGCGGGTGGTTCCATTCAAAATA 76718 ||| | || |||||| | | |||| | | | ||| |||||||| || || | Sbjct 10671 TGGACACCAGAGATGAAGAACCAGATCATCGCTCACAAG-----GGTTCCATCCAGAACA 10725 Query 76719 TCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGA 76778 || | || || || || | ||| | |||||| || || ||||| ||| | | Sbjct 10726 TCCAGGGCATTCCTGACGAGTTAAAGGAGCTCTACAAGACTGTCTGGGAGATCCG--TCA 10783 Query 76779 AAGATG--TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTAT 76836 | | |||| |||||||| || || |||||| ||| || || || || || | Sbjct 10784 ACGTACCCTCATCGACATGGCTGCCGACCGTGGTGCCTTTATCGACCAGAGCCAGTCGTT 10843 Query 76837 GAATCTATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGT 76895 || | ||||| | || | ||| || ||||| | |||| ||||| | ||||| | Sbjct 10844 CAACGTGTTCATCGCCGAGCCAAACTTTG-CCAAGTTGACTTCAATGCACTTCTACGCTT 10902 Query 76896 GGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGA 76933 |||| |||| || || || ||||||||||| ||| || Sbjct 10903 GGAAGAAGGGTCTGAAGACTGGAATGTACTACCTCAGA 10940 >seq1288 Length=22276 Score = 111 bits (122), Expect = 2e-19 Identities = 149/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGC 65082 |||||||| | ||||| || ||| | || ||| || ||| ||| ||||||||| Sbjct 468 AAGAAGGCCGAGTGGGCGATCCGCTGGATCGA---AAACTCGCGCAGCTTTGCCGAGCGC 524 Query 65083 CTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTAT 65142 || | |||||||| || ||||| ||||||||||| || || |||||| | || | Sbjct 525 CTCGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCTTC 584 Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGA 65202 ||| | |||||||| || ||||||| ||||| |||||| || || || || ||| Sbjct 585 TGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACCTTCTCGAACGAGCTGATCAGCCGC 644 Query 65203 GATGAGGGTCTCCACCAGGAGTTTGCC 65229 || ||||| |||||| || |||||| Sbjct 645 GACGAGGGCCTCCACTGCGACTTTGCC 671 >seq972 Length=14960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 285/429 (66%), Gaps = 11/429 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| | |||| || || || || || ||||| || Sbjct 1314 GGCGCCAAGATCCCCAAGGGTGCCATCCTCGTCGGACCACCTGGCACCGGTAAGACTCTG 1255 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAA 175393 ||||| || | ||| || || ||||| || |||||| | ||| | |||| | | Sbjct 1254 CTCGCAAAGGCAACCGCTGGCGAGTCAAAGGTTCCATTCTTTACCATT--TCTGGCTCTG 1197 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 ||||| | ||||||||||| ||||| ||| | | || || || |||||| || | Sbjct 1196 ACTTTATCGAGATGTTTGTCGGTGTTGGTCCGTCTCGAGTGCGTGAACTCTTTAAAGAGG 1137 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGT-GGGCAAGCAA 175512 | ||||| || ||||| || |||| || |||||||| || || || || | ||| Sbjct 1136 CTCGCGAGAACGCGCCATGCATCATCTTTATCGATGAGATCGACGCTGTCGGTCGCTCAA 1077 Query 175513 CGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 ||| || || | ||| |||||||| | || | || | |||||||| || Sbjct 1076 GATCTCGC-GGAGG-CTTCCA--CAATGACGAACGCGAGAATACCCTCAATCAACTGCTG 1021 Query 175573 ACCGAGATGGATGGCTTTGACA-ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCG 175631 ||||||||| ||||||| || ||| ||| | || || |||| | ||| || || Sbjct 1020 GTCGAGATGGACGGCTTTGGCACCACAGA-GGGCGTCGTCGTGTTTGCCGGCACCAACCG 962 Query 175632 CGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGT 175691 ||| | || || || || || || ||||||||||| || | | ||| | || Sbjct 961 TCCCGATGTGCTAGACTCTGCTCTTCTGCGGCCGGGTCGTTTCGACAGAACAATCTATGT 902 Query 175692 GGGTCTTCC 175700 ||| ||||| Sbjct 901 GGGCCTTCC 893 >seq1327 Length=12810 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||| ||| ||| ||| ||| |||| ||||||| || || ||||||||| Sbjct 397 GGCGCCAAGATGCCCAAGGGCATCCTGCTCTCGGGCGAGCCAGGCACCGGCAAGACCCTC 338 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||||| |||||||| || ||| | | ||||| ||| || | | | | | | | Sbjct 337 CTCGCCCGCGCCATCGCCGGAGAAGCCGACGTCCCCTTCCTCTACACCACCGGATCCAGC 278 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTT 175446 |||| || | || | | ||||| ||||||| ||| ||| | || |||||| Sbjct 277 TTTGACGAAAAGTATATAGGTGTCGGTGCCAGAAGAGTTAGAGACCTCTTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596492590321760